Condition-specific 3′ mRNA isoform half-lives and stability elements in yeast

JV Geisberg, Z Moqtaderi… - Proceedings of the …, 2023 - National Acad Sciences
Alternative polyadenylation generates numerous 3′ mRNA isoforms that can differ in their
stability, structure, and function. These isoforms can be used to map mRNA stabilizing and …

3′ untranslated regions are modular entities that determine polyadenylation profiles

KH Lui, JV Geisberg, Z Moqtaderi… - Molecular and Cellular …, 2022 - Am Soc Microbiol
The 3′ ends of eukaryotic mRNAs are generated by cleavage of nascent transcripts
followed by polyadenylation, which occurs at numerous sites within 3′ untranslated regions …

Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast

JV Geisberg, Z Moqtaderi, X Fan, F Ozsolak, K Struhl - Cell, 2014 - cell.com
We measured half-lives of 21,248 mRNA 3′ isoforms in yeast by rapidly depleting RNA
polymerase II from the nucleus and performing direct RNA sequencing throughout the decay …

Regulation of mRNA stability in yeast

A Jacobson, AH Brown, JL Donahue, D Herrick… - … Control of Gene …, 1990 - Springer
Differences in the decay rates of individual mRNAs can have profound effects on the overall
levels of expression of specific genes. Although the potential importance of mRNA stability …

[引用][C] Messenger RNA stability in yeast

AJP Brown - Yeast, 1989 - Wiley Online Library
Messenger RNA stability in yeast Page 1 YEAST VOL. 5: 239-257 (1989) Messenger RNA
Stability in Yeast ALISTAIR JP BROWN Biotechnology Unit, Institute of Genetics, University …

The cis acting sequences responsible for the differential decay of the unstable MFA2 and stable PGK1 transcripts in yeast include the context of the translational start …

T LaGRANDEUR, ROY Parker - Rna, 1999 - cambridge.org
A general pathway of mRNA turnover has been described for yeast in which the 3′ poly (A)
tail is first deadenylated to an oligo (A) length, leading to decapping and subsequent 5 …

Variations in yeast 3′-processing cis-elements correlate with transcript stability

JH Graber - Trends in Genetics, 2003 - cell.com
A large set of yeast mRNA 3′-processing regulatory sequences was analyzed statistically,
revealing a systematic variation that correlates with measured mRNA stability. Transcripts …

[HTML][HTML] Secondary structures involving the poly (A) tail and other

Z Moqtaderi, JV Geisberg, K Struhl - Microbial cell, 2014 - ncbi.nlm.nih.gov
In Saccharomyces cerevisiae, previous measurements of mRNA stabilities have been
determined on a per-gene basis. We and others have recently shown that yeast genes give …

A compensatory link between cleavage/polyadenylation and mRNA turnover regulates steady-state mRNA levels in yeast

Z Moqtaderi, JV Geisberg… - Proceedings of the …, 2022 - National Acad Sciences
Cells have compensatory mechanisms to coordinate the rates of major biological processes,
thereby permitting growth in a wide variety of conditions. Here, we uncover a compensatory …

A turnover pathway for both stable and unstable mRNAs in yeast: evidence for a requirement for deadenylation.

CJ Decker, R Parker - Genes & development, 1993 - genesdev.cshlp.org
To determine pathways of mRNA turnover in yeast, we have followed the poly (A) tail
removal and degradation of a pulse of newly synthesized transcripts from four different …