Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications

H Kudapa, S Azam, AG Sharpe, B Taran, R Li… - PloS one, 2014 - journals.plos.org
A comprehensive transcriptome assembly of chickpea has been developed using 134.95
million Illumina single-end reads, 7.12 million single-end FLX/454 reads and 139,214 …

Recent progress in alfalfa (Medicago sativa L.) genomics and genomic selection

C Hawkins, LX Yu - The Crop Journal, 2018 - Elsevier
Abstract Alfalfa (M. sativa L.) is a highly valuable forage crop, providing> 58 Mt of hay,
silage, and pasture each year in the United States. As alfalfa is an outcrossing autotetraploid …

Comparative transcriptome investigation of global gene expression changes caused by miR156 overexpression in Medicago sativa

R Gao, RS Austin, L Amyot, A Hannoufa - BMC genomics, 2016 - Springer
Background Medicago sativa (alfalfa) is a low-input forage and potential bioenergy crop,
and improving its yield and quality has always been a focus of the alfalfa breeding industry …

Databases and Information Integration for the Medicago truncatula Genome and Transcriptome

SB Cannon, JA Crow, ML Heuer, X Wang… - Plant …, 2005 - academic.oup.com
An international consortium is sequencing the euchromatic genespace of Medicago
truncatula. Extensive bioinformatic and database resources support the marker-anchored …

The genome of a wild Medicago species provides insights into the tolerant mechanisms of legume forage to environmental stress

T Wang, L Ren, C Li, D Zhang, X Zhang, G Zhou… - BMC biology, 2021 - Springer
Background Medicago ruthenica, a wild and perennial legume forage widely distributed in
semi-arid grasslands, is distinguished by its outstanding tolerance to environmental stress. It …

LegumeIP V3: from models to crops—an integrative gene discovery platform for translational genomics in legumes

X Dai, Z Zhuang, C Boschiero, Y Dong… - Nucleic Acids …, 2021 - academic.oup.com
Legumes have contributed to human health, sustainable food and feed production
worldwide for centuries. The study of model legumes has played vital roles in deciphering …

Population genomic analysis of Tunisian Medicago truncatula reveals candidates for local adaptation

ML Friesen, MA Cordeiro, RV Penmetsa… - The Plant …, 2010 - Wiley Online Library
Genome‐wide association studies rely upon segregating natural genetic variation,
particularly the patterns of polymorphism and correlation between adjacent markers. To …

An expanded maize gene expression atlas based on RNA sequencing and its use to explore root development

SC Stelpflug, RS Sekhon, B Vaillancourt… - The plant …, 2016 - Wiley Online Library
Comprehensive and systematic transcriptome profiling provides valuable insight into
biological and developmental processes that occur throughout the life cycle of a plant. We …

Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems

SS Yang, ZJ Tu, F Cheung, WW Xu, JAFS Lamb… - BMC genomics, 2011 - Springer
Abstract Background Alfalfa,[Medicago sativa (L.) sativa], a widely-grown perennial forage
has potential for development as a cellulosic ethanol feedstock. However, the genomics of …

[HTML][HTML] Legume genomics and transcriptomics: From classic breeding to modern technologies

M Afzal, SS Alghamdi, HH Migdadi, MA Khan… - Saudi Journal of …, 2020 - Elsevier
Legumes are essential and play a significant role in maintaining food standards and
augmenting physiochemical soil properties through the biological nitrogen fixation process …