Strategies for partitioning clock models in phylogenomic dating: application to the angiosperm evolutionary timescale
CSP Foster, SYW Ho - Genome Biology and Evolution, 2017 - academic.oup.com
Evolutionary timescales can be inferred from molecular sequence data using a Bayesian
phylogenetic approach. In these methods, the molecular clock is often calibrated using fossil …
phylogenetic approach. In these methods, the molecular clock is often calibrated using fossil …
Tip dating with fossil sites and stratigraphic sequences
Tip dating, a method of phylogenetic analysis in which fossils are included as terminals and
assigned an age, is becoming increasingly widely used in evolutionary studies. Current …
assigned an age, is becoming increasingly widely used in evolutionary studies. Current …
Inferring the timescale of phylogenetic trees from fossil data
Time-stamped historical observations are required for scaling phylogenetic estimates to
absolute time and, as a consequence, genomic data alone are not sufficient for dating the …
absolute time and, as a consequence, genomic data alone are not sufficient for dating the …
[图书][B] Understanding the tripartite approach to Bayesian divergence time estimation
RCM Warnock, AM Wright - 2020 - cambridge.org
Placing evolutionary events in the context of geological time is a fundamental goal in
paleobiology and macroevolution. In this Element we describe the tripartite model used for …
paleobiology and macroevolution. In this Element we describe the tripartite model used for …
Testing the molecular clock using mechanistic models of fossil preservation and molecular evolution
RCM Warnock, Z Yang… - Proceedings of the …, 2017 - royalsocietypublishing.org
Molecular sequence data provide information about relative times only, and fossil-based
age constraints are the ultimate source of information about absolute times in molecular …
age constraints are the ultimate source of information about absolute times in molecular …
A Bayesian phylogenetic method to estimate unknown sequence ages
Heterochronous data sets comprise molecular sequences sampled at different points in
time. If the temporal range of the sampled sequences is large relative to the rate of mutation …
time. If the temporal range of the sampled sequences is large relative to the rate of mutation …
Mismatch of the morphology model is mostly unproblematic in total-evidence dating: insights from an extensive simulation study
Calibrating the molecular clock is the most contentious step in every dating analysis, but the
emerging total-evidence dating approach promises increased objectivity. It combines …
emerging total-evidence dating approach promises increased objectivity. It combines …
[HTML][HTML] Comparison of different strategies for using fossil calibrations to generate the time prior in Bayesian molecular clock dating
Fossil calibrations are the utmost source of information for resolving the distances between
molecular sequences into estimates of absolute times and absolute rates in molecular clock …
molecular sequences into estimates of absolute times and absolute rates in molecular clock …
The influence of taxon sampling on Bayesian divergence time inference under scenarios of rate heterogeneity among lineages
AER Soares, CG Schrago - Journal of Theoretical Biology, 2015 - Elsevier
Although taxon sampling is commonly considered an important issue in phylogenetic
inference, it is rarely considered in the Bayesian estimation of divergence times. In fact, the …
inference, it is rarely considered in the Bayesian estimation of divergence times. In fact, the …
Dating tips for divergence-time estimation
The molecular clock is the only viable means of establishing an accurate timescale for Life
on Earth, but it remains reliant on a capricious fossil record for calibration.'Tip …
on Earth, but it remains reliant on a capricious fossil record for calibration.'Tip …