Strategies for partitioning clock models in phylogenomic dating: application to the angiosperm evolutionary timescale

CSP Foster, SYW Ho - Genome Biology and Evolution, 2017 - academic.oup.com
Evolutionary timescales can be inferred from molecular sequence data using a Bayesian
phylogenetic approach. In these methods, the molecular clock is often calibrated using fossil …

Tip dating with fossil sites and stratigraphic sequences

B King, M Rücklin - PeerJ, 2020 - peerj.com
Tip dating, a method of phylogenetic analysis in which fossils are included as terminals and
assigned an age, is becoming increasingly widely used in evolutionary studies. Current …

Inferring the timescale of phylogenetic trees from fossil data

W Pett, TA Heath - 2020 - hal.science
Time-stamped historical observations are required for scaling phylogenetic estimates to
absolute time and, as a consequence, genomic data alone are not sufficient for dating the …

[图书][B] Understanding the tripartite approach to Bayesian divergence time estimation

RCM Warnock, AM Wright - 2020 - cambridge.org
Placing evolutionary events in the context of geological time is a fundamental goal in
paleobiology and macroevolution. In this Element we describe the tripartite model used for …

Testing the molecular clock using mechanistic models of fossil preservation and molecular evolution

RCM Warnock, Z Yang… - Proceedings of the …, 2017 - royalsocietypublishing.org
Molecular sequence data provide information about relative times only, and fossil-based
age constraints are the ultimate source of information about absolute times in molecular …

A Bayesian phylogenetic method to estimate unknown sequence ages

B Shapiro, SYW Ho, AJ Drummond… - Molecular biology …, 2011 - academic.oup.com
Heterochronous data sets comprise molecular sequences sampled at different points in
time. If the temporal range of the sampled sequences is large relative to the rate of mutation …

Mismatch of the morphology model is mostly unproblematic in total-evidence dating: insights from an extensive simulation study

S Klopfstein, R Ryer, M Coiro, T Spasojevic - BioRxiv, 2019 - biorxiv.org
Calibrating the molecular clock is the most contentious step in every dating analysis, but the
emerging total-evidence dating approach promises increased objectivity. It combines …

[HTML][HTML] Comparison of different strategies for using fossil calibrations to generate the time prior in Bayesian molecular clock dating

J Barba-Montoya, M Dos Reis, Z Yang - Molecular Phylogenetics and …, 2017 - Elsevier
Fossil calibrations are the utmost source of information for resolving the distances between
molecular sequences into estimates of absolute times and absolute rates in molecular clock …

The influence of taxon sampling on Bayesian divergence time inference under scenarios of rate heterogeneity among lineages

AER Soares, CG Schrago - Journal of Theoretical Biology, 2015 - Elsevier
Although taxon sampling is commonly considered an important issue in phylogenetic
inference, it is rarely considered in the Bayesian estimation of divergence times. In fact, the …

Dating tips for divergence-time estimation

JE O'Reilly, M Dos Reis, PCJ Donoghue - Trends in Genetics, 2015 - cell.com
The molecular clock is the only viable means of establishing an accurate timescale for Life
on Earth, but it remains reliant on a capricious fossil record for calibration.'Tip …