The influence of proline residues on α‐helical structure

DN Woolfson, DH Williams - FEBS letters, 1990 - Wiley Online Library
Proline lacks an amide proton when found within proteins. This precludes hydrogen bonding
between it and hydrogen bond acceptors, and thus often restricts the residue to the first four …

Proline‐induced constraints in α‐helices

L Piela, G Némethy… - … : Original Research on …, 1987 - Wiley Online Library
The disrupting effect of a prolyl residue on an α‐helix has been analyzed by means of
conformational energy computations. In the preferred, nearly α‐helical conformations of Ac …

C—H⋯ O hydrogen bond involving proline residues in α-helices

P Chakrabarti, S Chakrabarti - Journal of molecular biology, 1998 - Elsevier
Despite proline being assumed to be a helix-breaker, a large number of α-helices are found
to contain Pro in globular as well as membrane proteins. Proline has no free NH group and …

Helix geometry in proteins

DJ Barlow, JM Thornton - Journal of molecular biology, 1988 - Elsevier
In this report we describe a general survey of all helices found in 57 of the known protein
crystal structures, together with a detailed analysis of 48 α-helices found in 16 of the …

Geometry of proline‐containing alpha‐helices in proteins

R Sankararamakrishnan… - International journal of …, 1992 - Wiley Online Library
Crystal structure analysis of proline‐containing α‐helices in proteins has been carried out.
High resolution crystal structures were selected from the Protein Data Bank. Apart from the …

Proline in α‐helix: Stability and conformation studied by dynamics simulation

RH Yun, A Anderson, J Hermans - Proteins: Structure, Function …, 1991 - Wiley Online Library
Free‐energy simulations have been used to estimate the change in the conformational
stability of short polyalanine α‐helices when one of the alanines is replaced by a proline …

Hydrogen bonds between short polar side chains and peptide backbone: Prevalence in proteins and effects on helix‐forming propensities

M Vijayakumar, H Qian, HX Zhou - Proteins: Structure, Function …, 1999 - Wiley Online Library
A survey of 322 proteins showed that the short polar (SP) side chains of four residues, Thr,
Ser, Asp, and Asn, have a very strong tendency to form hydrogen bonds with neighboring …

Design of helix ends: Amino acid preferences, hydrogen bonding and electrostatic interactions

S Dasgupta, JA Bell - … Journal of Peptide and Protein Research, 1993 - Wiley Online Library
The amino acid sequence and chemical interactions at the ends of 163 helices were
surveyed so as better to understand amino acid preferences previously observed …

Stable proline box motif at the N-terminal end of α-helices

AR Viguera, L Serrano - Protein science, 1999 - cambridge.org
We describe a novel N-terminal α-helix local motif that involves three hydrophobic residues
and a Pro residue (Pro-box motif). Database analysis shows that when Pro is the N-cap of …

Inter-chain proline: proline contacts contribute to the stability of the triple helical conformation

RS Bhatnagar, N Pattabiraman… - Journal of …, 1988 - Taylor & Francis
The triple helical conformation observed in the collagen group of proteins is related to the
presence of large numbers of imino residues and is derived from the stereochemical …