Protein-peptide interactions adopt the same structural motifs as monomeric protein folds
P Vanhee, F Stricher, L Baeten, E Verschueren… - Structure, 2009 - cell.com
We compared the modes of interaction between protein-peptide interfaces and those
observed within monomeric proteins and found surprisingly few differences. Over 65% of …
observed within monomeric proteins and found surprisingly few differences. Over 65% of …
A dataset of protein–protein interfaces generated with a sequence-order-independent comparison technique
While there are a number of structurally non-redundant datasets of protein monomers, there
is none of protein-protein interfaces. Yet, the availability of such a dataset is expected to …
is none of protein-protein interfaces. Yet, the availability of such a dataset is expected to …
Protein-peptide complex prediction through fragment interaction patterns
The number of protein-peptide interactions in a cell is so large that experimental
determination of all these complex structures would be a daunting task. Although homology …
determination of all these complex structures would be a daunting task. Although homology …
The structural basis of peptide-protein binding strategies
Peptide-protein interactions are very prevalent, mediating key processes such as signal
transduction and protein trafficking. How can peptides overcome the entropic cost involved …
transduction and protein trafficking. How can peptides overcome the entropic cost involved …
Structural space of protein–protein interfaces is degenerate, close to complete, and highly connected
M Gao, J Skolnick - … of the National Academy of Sciences, 2010 - National Acad Sciences
At the heart of protein–protein interactions are protein–protein interfaces where the direct
physical interactions occur. By developing and applying an efficient structural alignment …
physical interactions occur. By developing and applying an efficient structural alignment …
Structural motifs at protein‐protein interfaces: Protein cores versus two‐state and three‐state model complexes
The general similarity in the forces governing protein folding and protein-protein
associations has led us to examine the similarity in the architectural motifs between the …
associations has led us to examine the similarity in the architectural motifs between the …
Exploiting sequence and structure homologs to identify protein–protein binding sites
A rapid increase in the number of experimentally derived three‐dimensional structures
provides an opportunity to better understand and subsequently predict protein–protein …
provides an opportunity to better understand and subsequently predict protein–protein …
PixelDB: Protein–peptide complexes annotated with structural conservation of the peptide binding mode
V Frappier, M Duran, AE Keating - Protein Science, 2018 - Wiley Online Library
Abstract PixelDB, the Peptide Exosite Location Database, compiles 1966 non‐redundant,
high‐resolution structures of protein–peptide complexes filtered to minimize the impact of …
high‐resolution structures of protein–peptide complexes filtered to minimize the impact of …
Accurate prediction of peptide binding sites on protein surfaces
E Petsalaki, A Stark, E García-Urdiales… - PLoS computational …, 2009 - journals.plos.org
Many important protein–protein interactions are mediated by the binding of a short peptide
stretch in one protein to a large globular segment in another. Recent efforts have provided …
stretch in one protein to a large globular segment in another. Recent efforts have provided …
Similar chemistry, but different bond preferences in inter versus intra‐protein interactions
M Cohen, D Reichmann, H Neuvirth… - Proteins: Structure …, 2008 - Wiley Online Library
Proteins fold into a well‐defined structure as a result of the collapse of the polypeptide chain,
while transient protein‐complex formation mainly is a result of binding of two folded …
while transient protein‐complex formation mainly is a result of binding of two folded …