Targeted sequence capture as a powerful tool for evolutionary analysis1

CE Grover, A Salmon, JF Wendel - American journal of botany, 2012 - Wiley Online Library
Next‐generation sequencing technologies (NGS) have revolutionized biological research by
significantly increasing data generation while simultaneously decreasing the time to data …

Strategies for reducing per‐sample costs in target capture sequencing for phylogenomics and population genomics in plants

H Hale, EM Gardner, J Viruel, L Pokorny… - Applications in plant …, 2020 - Wiley Online Library
The reduced cost of high‐throughput sequencing and the development of gene sets with
wide phylogenetic applicability has led to the rise of sequence capture methods as a …

Targeted enrichment strategies for next‐generation plant biology

R Cronn, BJ Knaus, A Liston… - American journal of …, 2012 - Wiley Online Library
• Premise of the study: The dramatic advances offered by modern DNA sequencers continue
to redefine the limits of what can be accomplished in comparative plant biology. Even with …

Applications of next‐generation sequencing in plant biology

AN Egan, J Schlueter… - American journal of …, 2012 - Wiley Online Library
The last several years have seen revolutionary advances in DNA sequencing technologies
with the advent of next‐generation sequencing (NGS) techniques. NGS methods now allow …

Making next-generation sequencing work for you: approaches and practical considerations for marker development and phylogenetics

GT Godden, IE Jordon-Thaden, S Chamala… - Plant Ecology & …, 2012 - Taylor & Francis
Recent reviews are setting the stage for the use of next-generation sequencing technologies
in phylogenetic applications. However, the processes for developing new markers for …

Identifying conserved genomic elements and designing universal bait sets to enrich them

BC Faircloth - Methods in Ecology and Evolution, 2017 - Wiley Online Library
Targeted enrichment of conserved genomic regions is a popular method for collecting large
amounts of sequence data from non‐model taxa for phylogenetic, phylogeographic and …

Targeted capture in evolutionary and ecological genomics

MR Jones, JM Good - Molecular ecology, 2016 - Wiley Online Library
The rapid expansion of next‐generation sequencing has yielded a powerful array of tools to
address fundamental biological questions at a scale that was inconceivable just a few years …

What can next generation sequencing do for you? Next generation sequencing as a valuable tool in plant research

A Bräutigam, U Gowik - Plant biology, 2010 - Wiley Online Library
Next generation sequencing (NGS) technologies have opened fascinating opportunities for
the analysis of plants with and without a sequenced genome on a genomic scale. During the …

Genome sequencing approaches and successes

M Imelfort, J Batley, S Grimmond, D Edwards - Plant Genomics: Methods …, 2009 - Springer
Sequence data is crucial to our understanding of crop growth and development, as
differences in DNA sequence are responsible for almost all of the heritable differences …

Genome skimming for next-generation biodiversity analysis

S Dodsworth - Trends in Plant Science, 2015 - cell.com
High-throughput sequencing technologies have revolutionised the ease with which genomic
data can be obtained for any plant species, from trees to bryophytes, regardless of …