Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP

MM Barker, T Gaal, RL Gourse - Journal of molecular biology, 2001 - Elsevier
Strains containing ppGpp, a nucleotide whose synthesis is dependent on the RelA and
SpoT proteins of Escherichia coli, display slightly lower rRNA promoter activity and much …

Identification, nucleotide sequence, and characterization of PspF, the transcriptional activator of the Escherichia coli stress-induced psp operon

G Jovanovic, L Weiner, P Model - Journal of bacteriology, 1996 - Am Soc Microbiol
The phage shock protein (psp) operon (pspABCE) of Escherichia coli is strongly induced in
response to a variety of stressful conditions or agents such as filamentous phage infection …

Activities of constitutive promoters in Escherichia coli

ST Liang, M Bipatnath, YC Xu, SL Chen… - Journal of molecular …, 1999 - Elsevier
The in vivo activities of seven constitutive promoters in Escherichia coli have been
determined as functions of growth rate in wild-type relA+ spoT+ strains with normal levels of …

Guanosine 3′,5′-bispyrophosphate coordinates global gene expression during glucose-lactose diauxie in Escherichia coli

MF Traxler, DE Chang… - Proceedings of the …, 2006 - National Acad Sciences
Guanosine 3′, 5′-bispyrophosphate (ppGpp), also known as “magic spot,” has been
shown to bind prokaryotic RNA polymerase to down-regulate ribosome production and …

Effects of Guanosine Tetraphosphate, Guanosine Pentaphosphate, and β-γ Methylenyl-Guanosine Pentaphosphate on Gene Expression of Escherichia coli In Vitro

HL Yang, G Zubay, E Urm… - Proceedings of the …, 1974 - National Acad Sciences
The effects of guanosine tetraphosphate (ppGpp) and guanosine pentaphosphate
(pppGpp), both produced by E. coli, were measured on the activities of several genes in a …

Make and break the alarmone: regulation of (p) ppGpp synthetase/hydrolase enzymes in bacteria

S Ronneau, R Hallez - FEMS microbiology reviews, 2019 - academic.oup.com
Bacteria use dedicated mechanisms to respond adequately to fluctuating environments and
to optimize their chances of survival in harsh conditions. One of the major stress responses …

[HTML][HTML] Nucleoid proteins stimulate stringently controlled bacterial promoters: a link between the cAMP-CRP and the (p) ppGpp regulons in Escherichia coli

J Johansson, C Balsalobre, SY Wang, J Urbonaviciene… - Cell, 2000 - cell.com
We report that the H-NS nucleoid protein plays a positive role in the expression of stringently
regulated genes in Escherichia coli. Bacteria lacking both H-NS and the paralog StpA show …

Oligoribonuclease is the primary degradative enzyme for pGpG in Pseudomonas aeruginosa that is required for cyclic-di-GMP turnover

MW Orr, GP Donaldson, GB Severin… - Proceedings of the …, 2015 - National Acad Sciences
The bacterial second messenger cyclic di-GMP (c-di-GMP) controls biofilm formation and
other phenotypes relevant to pathogenesis. Cyclic-di-GMP is synthesized by diguanylate …

Characterization of the spoT gene of Escherichia coli

E Sarubbi, KE Rudd, H Xiao, K Ikehara… - Journal of Biological …, 1989 - Elsevier
The Escherichia coli spoT gene encodes a guanosine-3′, 5′-bispyrophosphate (ppGpp)
3′-pyrophosphohydrolase known to be responsible for cellular (ppGpp) degradation. The …

Role of ppGpp in rpoS Stationary-Phase Regulation in Escherichia coli

M Hirsch, T Elliott - Journal of bacteriology, 2002 - Am Soc Microbiol
The bacterial sigma factor RpoS is strongly induced under a variety of stress conditions and
during growth into stationary phase. Here, we used rpoS-lac fusions in Escherichia coli to …