A function accounting for training set size and marker density to model the average accuracy of genomic prediction

M Erbe, B Gredler, FR Seefried, B Bapst, H Simianer - PLoS One, 2013 - journals.plos.org
Prediction of genomic breeding values is of major practical relevance in dairy cattle
breeding. Deterministic equations have been suggested to predict the accuracy of genomic …

[HTML][HTML] Genomic prediction for Nordic Red Cattle using one-step and selection index blending

G Su, P Madsen, US Nielsen, EA Mäntysaari… - Journal of dairy …, 2012 - Elsevier
This study investigated the accuracy of direct genomic breeding values (DGV) using a
genomic BLUP model, genomic enhanced breeding values (GEBV) using a one-step …

Impacts of both reference population size and inclusion of a residual polygenic effect on the accuracy of genomic prediction

Z Liu, FR Seefried, F Reinhardt, S Rensing… - Genetics Selection …, 2011 - Springer
Background The purpose of this work was to study the impact of both the size of genomic
reference populations and the inclusion of a residual polygenic effect on dairy cattle genetic …

[HTML][HTML] Comparison of genomic predictions for lowly heritable traits using multi-step and single-step genomic best linear unbiased predictor in Holstein cattle

AR Guarini, DAL Lourenco, LF Brito, M Sargolzaei… - Journal of dairy …, 2018 - Elsevier
The success and sustainability of a breeding program incorporating genomic information is
largely dependent on the accuracy of predictions. For low heritability traits, large training …

[PDF][PDF] Assessment of cross-validation strategies for genomic prediction in cattle

M Erbe, ECG Pimentel, AR Sharifi… - Accuracy of Genomic …, 2013 - d-nb.info
The basic idea of cross-validation procedures is to divide a data set into a reference and a
validation set, to omit any kind of information of the validation set and to predict this …

Accuracy of genomic breeding values in multi-breed dairy cattle populations

BJ Hayes, PJ Bowman, AC Chamberlain… - Genetics Selection …, 2009 - Springer
Background Two key findings from genomic selection experiments are 1) the reference
population used must be very large to subsequently predict accurate genomic estimated …

[HTML][HTML] Comparison of genomic predictions using genomic relationship matrices built with different weighting factors to account for locus-specific variances

G Su, OF Christensen, L Janss, MS Lund - Journal of dairy science, 2014 - Elsevier
Various models have been used for genomic prediction. Bayesian variable selection models
often predict more accurate genomic breeding values than genomic BLUP (GBLUP), but …

[HTML][HTML] Predicting the effect of reference population on the accuracy of within, across, and multibreed genomic prediction

I Van den Berg, THE Meuwissen, IM MacLeod… - Journal of dairy …, 2019 - Elsevier
Genomic prediction is widely used to select candidates for breeding. Size and composition
of the reference population are important factors influencing prediction accuracy. In Holstein …

Within-and across-breed genomic prediction using whole-genome sequence and single nucleotide polymorphism panels

OOM Iheshiulor, JA Woolliams, X Yu… - Genetics Selection …, 2016 - Springer
Background Currently, genomic prediction in cattle is largely based on panels of about 54k
single nucleotide polymorphisms (SNPs). However with the decreasing costs of and current …

[HTML][HTML] Controlling bias in genomic breeding values for young genotyped bulls

S Tsuruta, DAL Lourenco, Y Masuda, I Misztal… - Journal of dairy …, 2019 - Elsevier
The objectives of this study were to investigate bias in genomic predictions for dairy cattle
and to find a practical approach to reduce the bias. The simulated data included …