Dynamic charge interactions create surprising rigidity in the ER/K α-helical protein motif

S Sivaramakrishnan, BJ Spink… - Proceedings of the …, 2008 - National Acad Sciences
Protein α-helices are ubiquitous secondary structural elements, seldom considered to be
stable without tertiary contacts. However, amino acid sequences in proteins that are based …

Combining single-molecule optical trapping and small-angle x-ray scattering measurements to compute the persistence length of a protein ER/K α-helix

S Sivaramakrishnan, J Sung, M Ali, S Doniach… - Biophysical journal, 2009 - cell.com
A relatively unknown protein structure motif forms stable isolated single α-helices, termed
ER/K α-helices, in a wide variety of proteins and has been shown to be essential for the …

Dynamic α‐helices: Conformations that do not conform

KS Sandhu, D Dash - Proteins: Structure, Function, and …, 2007 - Wiley Online Library
Structural transitions are important for the stability and function of proteins, but these
phenomena are poorly understood. An extensive analysis of Protein Data Bank entries …

Harnessing the unique structural properties of isolated α-helices

CJ Swanson, S Sivaramakrishnan - Journal of Biological Chemistry, 2014 - ASBMB
The α-helix is a ubiquitous secondary structural element that is almost exclusively observed
in proteins when stabilized by tertiary or quaternary interactions. However, beginning with …

Residue-specific α-helix propensities from molecular simulation

RB Best, D de Sancho, J Mittal - Biophysical journal, 2012 - cell.com
Formation of α-helices is a fundamental process in protein folding and assembly. By
studying helix formation in molecular simulations of a series of alanine-based peptides, we …

Increased helix and protein stability through the introduction of a new tertiary hydrogen bond

RW Peterson, EM Nicholson, R Thapar… - Journal of molecular …, 1999 - Elsevier
In an effort to quantify the importance of hydrogen bonding and α-helix formation to protein
stability, a capping box motif was introduced into the small phosphocarrier protein HPr …

Local and macroscopic electrostatic interactions in single α-helices

EG Baker, GJ Bartlett, MP Crump, RB Sessions… - Nature chemical …, 2015 - nature.com
The noncovalent forces that stabilize protein structures are not fully understood. One way to
address this is to study equilibria between unfolded states and α-helices in peptides …

A single carboxy-terminal arginine determines the amino-terminal helix conformation of an alanine-based peptide

WR Fiori, KM Lundberg, GL Millhauser - Nature structural biology, 1994 - nature.com
Arginine is a stabilizing element in both thermophilic and low molecular weight proteins.
Similarly Lys+→ Arg+ substitutions increase the helix content of designed helical peptides …

Effect of the N3 residue on the stability of the α‐helix

TM Iqbalsyah, AJ Doig - Protein Science, 2004 - Wiley Online Library
N3 is the third position from the N terminus in the α‐helix with helical backbone dihedral
angles. All 20 amino acids have been placed in the N3 position of a synthetic helical peptide …

Influence of Glu/Arg, Asp/Arg, and Glu/Lys salt bridges on α-helical stability and folding kinetics

H Meuzelaar, J Vreede, S Woutersen - Biophysical journal, 2016 - cell.com
Using a combination of ultraviolet circular dichroism, temperature-jump transient-infrared
spectroscopy, and molecular dynamics simulations, we investigate the effect of salt bridges …