[HTML][HTML] From function to translation: Decoding genetic susceptibility to human diseases via artificial intelligence

E Long, P Wan, Q Chen, Z Lu, J Choi - Cell Genomics, 2023 - cell.com
While genome-wide association studies (GWAS) have discovered thousands of disease-
associated loci, molecular mechanisms for a considerable fraction of the loci remain to be …

[HTML][HTML] Hygieia: AI/ML pipeline integrating healthcare and genomics data to investigate genes associated with targeted disorders and predict disease

W DeGroat, V Venkat, W Pierre-Louis, H Abdelhalim… - Software Impacts, 2023 - Elsevier
Due to the advancements in sequencing technologies, genomics data is developing at an
unmatched pace and levels to foster translational research. Over ten million genomics …

The landscape of GWAS validation; systematic review identifying 309 validated non-coding variants across 130 human diseases

AJ Alsheikh, S Wollenhaupt, EA King, J Reeb… - BMC medical …, 2022 - Springer
Background The remarkable growth of genome-wide association studies (GWAS) has
created a critical need to experimentally validate the disease-associated variants, 90% of …

The post-GWAS era: from association to function

MD Gallagher, AS Chen-Plotkin - The American Journal of Human …, 2018 - cell.com
During the past 12 years, genome-wide association studies (GWASs) have uncovered
thousands of genetic variants that influence risk for complex human traits and diseases. Yet …

From GWAS to function: using functional genomics to identify the mechanisms underlying complex diseases

E Cano-Gamez, G Trynka - Frontiers in genetics, 2020 - frontiersin.org
Genome-wide association studies (GWAS) have successfully mapped thousands of loci
associated with complex traits. These associations could reveal the molecular mechanisms …

Reaching the end-game for GWAS: machine learning approaches for the prioritization of complex disease loci

HL Nicholls, CR John, DS Watson, PB Munroe… - Frontiers in …, 2020 - frontiersin.org
Genome-wide association studies (GWAS) have revealed thousands of genetic loci that
underpin the complex biology of many human traits. However, the strength of GWAS–the …

GWAS4D: multidimensional analysis of context-specific regulatory variant for human complex diseases and traits

D Huang, X Yi, S Zhang, Z Zheng, P Wang… - Nucleic acids …, 2018 - academic.oup.com
Genome-wide association studies have generated over thousands of susceptibility loci for
many human complex traits, and yet for most of these associations the true causal variants …

Laying a solid foundation for Manhattan–'setting the functional basis for the post-GWAS era'

X Zhang, SD Bailey, M Lupien - Trends in Genetics, 2014 - cell.com
Genome-wide association studies (GWAS) have identified more than 8900 genetic variants,
mainly single-nucleotide polymorphisms (SNPs), associated with hundreds of human traits …

Beyond GWASs: illuminating the dark road from association to function

SL Edwards, J Beesley, JD French… - The American Journal of …, 2013 - cell.com
Genome-wide association studies (GWASs) have enabled the discovery of common genetic
variation contributing to normal and pathological traits and clinical drug responses, but …

Predicting regulatory variants using a dense epigenomic mapped CNN model elucidated the molecular basis of trait-tissue associations

G Pei, R Hu, Y Dai, AM Manuel, Z Zhao… - Nucleic acids …, 2021 - academic.oup.com
Assessing the causal tissues of human complex diseases is important for the prioritization of
trait-associated genetic variants. Yet, the biological underpinnings of trait-associated …