Selection on codon bias

R Hershberg, DA Petrov - Annual review of genetics, 2008 - annualreviews.org
In a wide variety of organisms, synonymous codons are used with different frequencies, a
phenomenon known as codon bias. Population genetic studies have shown that …

General rules for optimal codon choice

R Hershberg, DA Petrov - PLoS genetics, 2009 - journals.plos.org
Different synonymous codons are favored by natural selection for translation efficiency and
accuracy in different organisms. The rules governing the identities of favored codons in …

Accounting for background nucleotide composition when measuring codon usage bias

JA Novembre - Molecular biology and evolution, 2002 - academic.oup.com
The phenomenon of codon usage bias has been important in the study of evolution because
it provides examples of weak selection working at the molecular level. During the last two …

Forces that influence the evolution of codon bias

PM Sharp, LR Emery, K Zeng - … Transactions of the …, 2010 - royalsocietypublishing.org
The frequencies of alternative synonymous codons vary both among species and among
genes from the same genome. These patterns have been inferred to reflect the action of …

Variation in global codon usage bias among prokaryotic organisms is associated with their lifestyles

M Botzman, H Margalit - Genome biology, 2011 - Springer
Background It is widely acknowledged that synonymous codons are used unevenly among
genes in a genome. In organisms under translational selection, genes encoding highly …

Evolution of synonymous codon usage in metazoans

L Duret - Current opinion in genetics & development, 2002 - Elsevier
The vast amount of data generated by genome projects and the recent development of
population genetics models make comparative sequence analyses a very powerful …

Codon usage bias covaries with expression breadth and the rate of synonymous evolution in humans, but this is not evidence for selection

AO Urrutia, LD Hurst - Genetics, 2001 - academic.oup.com
In numerous species, from bacteria to Drosophila, evidence suggests that selection acts
even on synonymous codon usage: codon bias is greater in more abundantly expressed …

Codon usage bias: an endless tale

A Iriarte, G Lamolle, H Musto - Journal of molecular evolution, 2021 - Springer
Since the genetic code is degenerate, several codons are translated to the same amino
acid. Although these triplets were historically considered to be “synonymous” and therefore …

The genetic code is one in a million

SJ Freeland, LD Hurst - Journal of molecular evolution, 1998 - Springer
Statistical and biochemical studies of the genetic code have found evidence of nonrandom
patterns in the distribution of codon assignments. It has, for example, been shown that the …

Codon usage bias: causative factors, quantification methods and genome‐wide patterns: with emphasis on insect genomes

SK Behura, DW Severson - Biological Reviews, 2013 - Wiley Online Library
Codon usage bias refers to the phenomenon where specific codons are used more often
than other synonymous codons during translation of genes, the extent of which varies within …