Integration host factor: putting a twist on protein–DNA recognition
TW Lynch, EK Read, AN Mattis, JF Gardner… - Journal of molecular …, 2003 - Elsevier
Integration host factor (IHF) is a DNA–bending protein that recognizes its cognate sites
through indirect readout. Previous studies have shown that binding of wild-type (WT)-IHF is …
through indirect readout. Previous studies have shown that binding of wild-type (WT)-IHF is …
A good turn for DNA: the structure of integration host factor bound to DNA
T Ellenberger, A Landy - Structure, 1997 - cell.com
The crystal structure of integration host factor (IHF) complexed with DNA shows how a small
heterodimeric protein can induce a big bend in DNA. IHF exerts leverage in the minor …
heterodimeric protein can induce a big bend in DNA. IHF exerts leverage in the minor …
Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn
PA Rice, S Yang, K Mizuuchi, HA Nash - Cell, 1996 - cell.com
Integration host factor (IHF) is a small heterodimeric protein that specifically binds to DNA
and functions as an architectural factor in many cellular processes in prokaryotes. Here, we …
and functions as an architectural factor in many cellular processes in prokaryotes. Here, we …
DNA bending and twisting properties of integration host factor determined by DNA cyclization
B Teter, SD Goodman, DJ Galas - Plasmid, 2000 - Elsevier
The binding of many proteins to DNA is profoundly affected by DNA bending, twisting, and
supercoiling. When protein binding alters DNA conformation, interaction between inherent …
supercoiling. When protein binding alters DNA conformation, interaction between inherent …
Characterization of a set of integration host factor mutants deficient for DNA binding
AE Granston, HA Nash - Journal of molecular biology, 1993 - Elsevier
Integration host factor, IHF, is a sequence-specific DNA-binding and DNA-bending protein
composed of two related but non-identical subunits. We report the isolation and …
composed of two related but non-identical subunits. We report the isolation and …
In vitro selection of integration host factor binding sites
SD Goodman, NJ Velten, Q Gao, S Robinson… - Journal of …, 1999 - Am Soc Microbiol
Integration host factor (IHF) is a bacterial protein that binds and severely bends a specific
DNA target. IHF binding sites are approximately 30 to 35 bp long and are apparently divided …
DNA target. IHF binding sites are approximately 30 to 35 bp long and are apparently divided …
Single base-pair precision and structural rigidity in a small IHF-induced DNA loop
SE Nunes-Düby, LI Smith-Mungo, A Landy - Journal of molecular biology, 1995 - Elsevier
The prokaryotic integration host factor (IHF) is a DNA-binding protein that binds to specific
DNA sites as a heterodimer. Genetic and mutational analyses have previously identified …
DNA sites as a heterodimer. Genetic and mutational analyses have previously identified …
Specific photocrosslinking of DNA-protein complexes: identification of contacts between integration host factor and its target DNA.
SW Yang, HA Nash - … of the National Academy of Sciences, 1994 - National Acad Sciences
Azide moieties have been specifically placed in the backbone of DNA by chemical coupling
between azidophenacyl bromide and uniquely positioned phosphorothioate residues. The …
between azidophenacyl bromide and uniquely positioned phosphorothioate residues. The …
Two-step interrogation then recognition of DNA binding site by Integration Host Factor: an architectural DNA-bending protein
Y Velmurugu, P Vivas, M Connolly… - Nucleic acids …, 2018 - academic.oup.com
The dynamics and mechanism of how site-specific DNA-bending proteins initially interrogate
potential binding sites prior to recognition have remained elusive for most systems. Here we …
potential binding sites prior to recognition have remained elusive for most systems. Here we …
Integration host factor bends and bridges DNA in a multiplicity of binding modes with varying specificity
SB Yoshua, GD Watson, JAL Howard… - Nucleic Acids …, 2021 - academic.oup.com
Nucleoid-associated proteins (NAPs) are crucial in organizing prokaryotic DNA and
regulating genes. Vital to these activities are complex nucleoprotein structures, however …
regulating genes. Vital to these activities are complex nucleoprotein structures, however …