MetaboSignal: a network-based approach for topological analysis of metabotype regulation via metabolic and signaling pathways
MetaboSignal is an R package that allows merging metabolic and signaling pathways
reported in the Kyoto Encyclopaedia of Genes and Genomes (KEGG). It is a network-based …
reported in the Kyoto Encyclopaedia of Genes and Genomes (KEGG). It is a network-based …
[HTML][HTML] Topological analysis of metabolic networks integrating co-segregating transcriptomes and metabolomes in type 2 diabetic rat congenic series
ME Dumas, C Domange, S Calderari, AR Martínez… - Genome medicine, 2016 - Springer
Background The genetic regulation of metabolic phenotypes (ie, metabotypes) in type 2
diabetes mellitus occurs through complex organ-specific cellular mechanisms and networks …
diabetes mellitus occurs through complex organ-specific cellular mechanisms and networks …
[HTML][HTML] Metabonomics in gastroenterology and hepatology
JT Bjerrum, OH Nielsen - International Journal of Molecular Sciences, 2019 - mdpi.com
Attempts have been made to reveal the true nature of a range of puzzling diseases within
gastroenterology and hepatology using different kinds of omics, namely genomics …
gastroenterology and hepatology using different kinds of omics, namely genomics …
[HTML][HTML] MetaboTools: a comprehensive toolbox for analysis of genome-scale metabolic models
MK Aurich, RMT Fleming, I Thiele - Frontiers in physiology, 2016 - frontiersin.org
Metabolomic data sets provide a direct read-out of cellular phenotypes and are increasingly
generated to study biological questions. Previous work, by us and others, revealed the …
generated to study biological questions. Previous work, by us and others, revealed the …
[HTML][HTML] Metaboverse enables automated discovery and visualization of diverse metabolic regulatory patterns
Metabolism is intertwined with various cellular processes, including controlling cell fate,
influencing tumorigenesis, participating in stress responses and more. Metabolism is a …
influencing tumorigenesis, participating in stress responses and more. Metabolism is a …
MetaboNetworks, an interactive Matlab-based toolbox for creating, customizing and exploring sub-networks from KEGG
MetaboNetworks is a tool to create custom sub-networks in Matlab using main reaction pairs
as defined by the Kyoto Encyclopaedia of Genes and Genomes and can be used to explore …
as defined by the Kyoto Encyclopaedia of Genes and Genomes and can be used to explore …
[PDF][PDF] SegreD (2011) Epistatic interaction maps relative to multiple metabolic phenotypes
ES Snitkin - PLoS Genetics - cyberleninka.org
An epistatic interaction between two genes occurs when the phenotypic impact of one gene
depends on another gene, often exposing a functional association between them. Due to …
depends on another gene, often exposing a functional association between them. Due to …
[HTML][HTML] MetaLo: metabolic analysis of Logical models extracted from molecular interaction maps
S Aghakhani, A Niarakis, S Soliman - Journal of Integrative …, 2024 - degruyter.com
Molecular interaction maps (MIMs) are static graphical representations depicting complex
biochemical networks that can be formalized using one of the Systems Biology Graphical …
biochemical networks that can be formalized using one of the Systems Biology Graphical …
Biocyc: Online resource for genome and metabolic pathway analysis
R Caspi, R Billington, H Foerster, CA Fulcher… - The FASEB …, 2016 - Wiley Online Library
BioCyc. org is a genomic resource that contains more than 7600 Pathway/Genome
Databases (PGDBs) for organisms whose genomes have been completely sequenced …
Databases (PGDBs) for organisms whose genomes have been completely sequenced …
[HTML][HTML] MetaboMAPS: pathway sharing and multi-omics data visualization in metabolic context
Metabolic pathways are an important part of systems biology research since they illustrate
complex interactions between metabolites, enzymes, and regulators. Pathway maps are …
complex interactions between metabolites, enzymes, and regulators. Pathway maps are …