Alexander Partin*, Thomas Brettin, Yitan Zhu, James M. Dolezal, Sara Kochanny, Alexander T. Pearson, Maulik Shukla, Yvonne A. Evrard, James H. Doroshow and …

K Chen, CM Svensson, S Liang - Advances in mathematical and …, 2023 - books.google.com
With recent advancements in applications of artificial intelligence in medicine and biology,
predictive modeling has gradually become one of the primary directions in cancer research …

[HTML][HTML] PDXGEM: patient-derived tumor xenograft-based gene expression model for predicting clinical response to anticancer therapy in cancer patients

Y Kim, D Kim, B Cao, R Carvajal, M Kim - BMC bioinformatics, 2020 - Springer
Background Cancer is a highly heterogeneous disease with varying responses to anti-
cancer drugs. Although several attempts have been made to predict the anti-cancer …

PD3D®models: New age in cancer research and clinical diagnostics

A Pflaume, S Exner, K Herrera-Glomm, J Loskutov… - Cancer Research, 2022 - AACR
Patient-derived 3D cell culture models (PD3D®) developed as a powerful tool for disease
modelling, biomarker and drug discovery. Currently, they are gaining increasing significance …

The cancer omics and drug experimental response dataset (CODERData): A harmonized benchmark dataset for machine learning models of drug response prediction

J Jacobson, S Schwartz, MR Weil, N Kumar, S Gosline - Cancer Research, 2024 - AACR
Background: Determining a patient's response to a specific therapy is a vital step in
developing personalized cancer treatment. Personalized treatment relies on two key …

The Development And Application Of Machine Learning For Drug Discovery And Drug Response Prediction For Personalized Cancer Treatment

D Stover - 2024 - conservancy.umn.edu
In the field of pharmacogenomics and precision medicine, gene expression analysis has
become a crucial tool in predicting patient drug response. My contributions to this field come …

Computational models for predicting drug responses in cancer research

F Azuaje - Briefings in bioinformatics, 2017 - academic.oup.com
The computational prediction of drug responses based on the analysis of multiple types of
genome-wide molecular data is vital for accomplishing the promise of precision medicine in …

[HTML][HTML] Cancer models

M Breitenbach, J Hoffmann - Frontiers in oncology, 2018 - frontiersin.org
Cancer is still a major concern for public health and is a cause of death while being
psychologically the most dreaded disease. Until recent times, the diagnosis of a progressed …

[HTML][HTML] pRRophetic: an R package for prediction of clinical chemotherapeutic response from tumor gene expression levels

P Geeleher, N Cox, RS Huang - PloS one, 2014 - journals.plos.org
We recently described a methodology that reliably predicted chemotherapeutic response in
multiple independent clinical trials. The method worked by building statistical models from …

Personalized models to guide precision medicine

C Pauli, L Puca, BM Emerling, B Hopkins, A Sboner… - Cancer Research, 2016 - AACR
BACKGROUND Precision oncology is a clinical approach aimed towards tailoring treatment
strategies for patients based on the genetic profile of each patient's cancer. Available cell …

PD3D®models as jacks-of-all-trades for cancer research and therapy response prediction

L Wedeken, S Forbrig, K Herrera-Glomm, J Loskutov… - Cancer Research, 2024 - AACR
Physiologically relevant in vitro tumor models are crucial in any research setting from
preclinical drug development to functional precision oncology. Patient-derived 3D cell …