Concise polygenic models for cancer-specific identification of drug-sensitive tumors from their multi-omics profiles
In silico models to predict which tumors will respond to a given drug are necessary for
Precision Oncology. However, predictive models are only available for a handful of cases …
Precision Oncology. However, predictive models are only available for a handful of cases …
Drug sensitivity prediction modeling from genomics, transcriptomics and inferred protein activity
H Mahmoud, B Haibe-Kains - Clinical Cancer Research, 2020 - AACR
Background: Machine learning models that rely on single omics data for drug sensitivity
prediction are challenging and frequently fail within precision medicine scenarios …
prediction are challenging and frequently fail within precision medicine scenarios …
kESVR: An ensemble model for drug response prediction in precision medicine using cancer cell lines gene expression
A Majumdar, Y Liu, Y Lu, S Wu, L Cheng - Genes, 2021 - mdpi.com
Background: Cancer cell lines are frequently used in research as in-vitro tumor models.
Genomic data and large-scale drug screening have accelerated the right drug selection for …
Genomic data and large-scale drug screening have accelerated the right drug selection for …
Comparison of multiple modalities for drug response prediction with learning curves using neural networks and XGBoost
N Branson, PR Cutillas, C Bessant - Bioinformatics Advances, 2024 - academic.oup.com
Motivation Anti-cancer drug response prediction is a central problem within stratified
medicine. Transcriptomic profiles of cancer cell lines are typically used for drug response …
medicine. Transcriptomic profiles of cancer cell lines are typically used for drug response …
KIYA-PREDICT™ XPDX: An ex vivo 3D spheroid platform for modeling in vivo responses to multiple classes of oncology therapeutics
AL Carlson, NW Dance, KJ Burgess, DY Nadeau… - Cancer Research, 2024 - AACR
Patient-derived xenografts (PDX) are a powerful and commonly used tool in preclinical drug
development as they represent an in vivo platform for screening drug response in human …
development as they represent an in vivo platform for screening drug response in human …
Leveraging TCGA gene expression data to build predictive models for cancer drug response
Background Machine learning has been utilized to predict cancer drug response from multi-
omics data generated from sensitivities of cancer cell lines to different therapeutic …
omics data generated from sensitivities of cancer cell lines to different therapeutic …
A cross-study analysis of drug response prediction in cancer cell lines
To enable personalized cancer treatment, machine learning models have been developed
to predict drug response as a function of tumor and drug features. However, most algorithm …
to predict drug response as a function of tumor and drug features. However, most algorithm …
Animal models for personalized treatment options
I Fichtner, K Klinghammer, D Behrens… - … Journal of Clinical …, 2017 - search.proquest.com
The molecular analysis of tumors using highly sophisticated gene expression and
sequencing methods enables the comprehensive identification of drug targets and …
sequencing methods enables the comprehensive identification of drug targets and …
Looking at the BiG picture: incorporating bipartite graphs in drug response prediction
DE Hostallero, Y Li, A Emad - Bioinformatics, 2022 - academic.oup.com
Motivation The increasing number of publicly available databases containing drugs'
chemical structures, their response in cell lines, and molecular profiles of the cell lines has …
chemical structures, their response in cell lines, and molecular profiles of the cell lines has …
A gentle introduction to understanding preclinical data for cancer pharmaco-omic modeling
C Piyawajanusorn, LC Nguyen, G Ghislat… - Briefings in …, 2021 - academic.oup.com
A central goal of precision oncology is to administer an optimal drug treatment to each
cancer patient. A common preclinical approach to tackle this problem has been to …
cancer patient. A common preclinical approach to tackle this problem has been to …