Morphological homoplasy, life history evolution, and historical biogeography of plethodontid salamanders inferred from complete mitochondrial genomes

RL Mueller, JR Macey, M Jaekel… - Proceedings of the …, 2004 - National Acad Sciences
The evolutionary history of the largest salamander family (Plethodontidae) is characterized
by extreme morphological homoplasy. Analysis of the mechanisms generating such …

Plethodontid salamander mitochondrial genomics: a parsimony evaluation of character conflict and implications for historical biogeography

JR Macey - Cladistics, 2005 - Wiley Online Library
A new parsimony analysis of 27 complete mitochondrial genomic sequences is conducted to
investigate the phylogenetic relationships of plethodontid salamanders. This analysis …

A multigenic perspective on phylogenetic relationships in the largest family of salamanders, the Plethodontidae

DR Vieites, SN Román, MH Wake, DB Wake - Molecular Phylogenetics and …, 2011 - Elsevier
Despite several recent studies, the phylogeny of plethodontid salamanders is not yet fully
resolved and the phylogenetic positions of several key genera, especially Aneides …

Enlarged multilocus data set provides surprisingly younger time of origin for the Plethodontidae, the largest family of salamanders

XX Shen, D Liang, MY Chen, RL Mao… - Systematic …, 2016 - academic.oup.com
Deep phylogenetic relationships of the largest salamander family Plethodontidae have been
difficult to resolve, probably reflecting a rapid diversification early in their evolutionary …

Evolutionary rates, divergence dates, and the performance of mitochondrial genes in Bayesian phylogenetic analysis

RL Mueller - Systematic biology, 2006 - academic.oup.com
The mitochondrial genome is one of the most frequently used loci in phylogenetic and
phylogeographic analyses, and it is becoming increasingly possible to sequence and …

Phylogenomic data reveal reticulation and incongruence among mitochondrial candidate species in Dusky Salamanders (Desmognathus)

RA Pyron, KA O'Connell, EM Lemmon… - Molecular Phylogenetics …, 2020 - Elsevier
Gene flow between evolutionarily distinct lineages is increasingly recognized as a common
occurrence. Such processes distort our ability to diagnose and delimit species, as well as …

What are the consequences of combining nuclear and mitochondrial data for phylogenetic analysis? Lessons from Plethodonsalamanders and 13 other vertebrate …

MC Fisher-Reid, JJ Wiens - BMC evolutionary biology, 2011 - Springer
Background The use of mitochondrial DNA data in phylogenetics is controversial, yet studies
that combine mitochondrial and nuclear DNA data (mtDNA and nucDNA) to estimate …

Higher-level salamander relationships and divergence dates inferred from complete mitochondrial genomes

P Zhang, DB Wake - Molecular phylogenetics and evolution, 2009 - Elsevier
Phylogenetic relationships among the salamander families have been difficult to resolve,
largely because the window of time in which major lineages diverged was very short relative …

Phylogenetic evidence for a major reversal of life‐history evolution in plethodontid salamanders

PT Chippindale, RM Bonett, AS Baldwin, JJ Wiens - Evolution, 2004 - academic.oup.com
The transition from aquatic to terrestrial eggs is a key evolutionary change that has allowed
vertebrates to successfully colonize and exploit the land. Although most amphibians retain …

Diversification and biogeographical history of Neotropical plethodontid salamanders

SM Rovito, G Parra-Olea, E Recuero… - Zoological Journal of …, 2015 - academic.oup.com
The Neotropical bolitoglossine salamanders represent an impressive adaptive radiation,
comprising roughly 40% of global salamander species diversity. Despite decades of …