The role of long non-coding RNAs in chromatin structure and gene regulation: variations on a theme

D Umlauf, P Fraser, T Nagano - 2008 - degruyter.com
Transcriptome studies have uncovered a plethora of non-coding RNAs (ncRNA) in
mammals. Most originate within intergenic regions of the genome and recent evidence …

Long noncoding RNAs: an emerging link between gene regulation and nuclear organization

S Quinodoz, M Guttman - Trends in cell biology, 2014 - cell.com
Mammalian genomes encode thousands of long noncoding RNAs (lncRNAs) that play
important roles in diverse biological processes. As a class, lncRNAs are generally enriched …

Regulation of the mammalian epigenome by long noncoding RNAs

J Whitehead, GK Pandey, C Kanduri - Biochimica et Biophysica Acta (BBA) …, 2009 - Elsevier
Genomic analyses have demonstrated that although less than 2% of the mammalian
genome encodes proteins, at least two thirds is transcribed. Many nontranslated RNAs have …

The properties of long noncoding RNAs that regulate chromatin

M Rutenberg-Schoenberg, AN Sexton… - Annual review of …, 2016 - annualreviews.org
Beyond coding for proteins, RNA molecules have well-established functions in the
posttranscriptional regulation of gene expression. Less clear are the upstream roles of RNA …

Long noncoding RNA and epigenomics

C Kanduri - RNA Infrastructure and Networks, 2011 - Springer
Accumulating evidence over the last decade has presented us with the intriguing
observation that the majority of eukaryotic genomes are pervasively transcribed to encode a …

[HTML][HTML] Nuclear lncRNAs as epigenetic regulators—beyond skepticism

S Nakagawa, Y Kageyama - Biochimica et Biophysica Acta (BBA)-Gene …, 2014 - Elsevier
Systematic transcriptome analysis has revealed that a vast majority of the mammalian
genome is transcribed into RNA, thus establishing the concept of “pervasive transcription.” …

Functional insights into the role of nuclear-retained long noncoding RNAs in gene expression control in mammalian cells

DK Singh, KV Prasanth - Chromosome research, 2013 - Springer
The mammalian genome harbors thousands of long noncoding RNA (lncRNA) genes.
Recent studies have indicated the involvement of several of these lncRNAs in the regulation …

Eukaryotic regulatory RNAs: an answer to the 'genome complexity'conundrum

KV Prasanth, DL Spector - Genes & development, 2007 - genesdev.cshlp.org
A large portion of the eukaryotic genome is transcribed as noncoding RNAs (ncRNAs).
While once thought of primarily as “junk,” recent studies indicate that a large number of …

Roles of long noncoding RNAs in chromosome domains

S Tomita, MOA Abdalla, S Fujiwara… - Wiley …, 2017 - Wiley Online Library
The cell nucleus is highly organized and functionally compartmentalized. Double‐stranded
naked DNA is complexed with core histones and assembled into nucleosomes and …

[HTML][HTML] Noncoding RNA-chromatin association: Functions and mechanisms

Y Yin, X Shen - Fundamental Research, 2023 - Elsevier
Pervasive transcription of the mammalian genome produces hundreds of thousands of
noncoding RNAs (ncRNAs). Numerous studies have suggested that some of these ncRNAs …