Dealing with the unknown: metabolomics and metabolite atlases
BP Bowen, TR Northen - Journal of the American Society for Mass …, 2010 - Springer
Metabolomics is the comprehensive profiling of the small molecule composition of a
biological sample. Since metabolites are often the indirect products of gene expression, this …
biological sample. Since metabolites are often the indirect products of gene expression, this …
Sample normalization methods in quantitative metabolomics
To reveal metabolomic changes caused by a biological event in quantitative metabolomics,
it is critical to use an analytical tool that can perform accurate and precise quantification to …
it is critical to use an analytical tool that can perform accurate and precise quantification to …
Data-processing strategies for metabolomics studies
MMWB Hendriks, FA van Eeuwijk, RH Jellema… - TrAC Trends in …, 2011 - Elsevier
Metabolomics studies aim at a better understanding of biochemical processes by studying
relations between metabolites and between metabolites and other types of information (eg …
relations between metabolites and between metabolites and other types of information (eg …
Advances in computational metabolomics and databases deepen the understanding of metabolisms
H Tsugawa - Current opinion in biotechnology, 2018 - Elsevier
Highlights•Deeper understanding of metabolisms is accelerated by computational
metabolomics.•Advances for metabolite identification, classification, and prediction are …
metabolomics.•Advances for metabolite identification, classification, and prediction are …
Metabolite identification for mass spectrometry-based metabolomics using multiple types of correlated ion information
Metabolite identification remains a bottleneck in mass spectrometry (MS)-based
metabolomics. Currently, this process relies heavily on tandem mass spectrometry (MS/MS) …
metabolomics. Currently, this process relies heavily on tandem mass spectrometry (MS/MS) …
Multiple reaction monitoring profiling (MRM profiling): Small molecule exploratory analysis guided by chemical functionality
Small molecules, including metabolites and lipids, provide information on metabolic
pathways and active biological processes in living organisms. They are often diagnostic of …
pathways and active biological processes in living organisms. They are often diagnostic of …
Comparison of peak‐picking workflows for untargeted liquid chromatography/high‐resolution mass spectrometry metabolomics data analysis
RATIONALE Data analysis is a key step in mass spectrometry based untargeted
metabolomics, starting with the generation of generic peak lists from raw liquid …
metabolomics, starting with the generation of generic peak lists from raw liquid …
Development of a liquid chromatography–high resolution mass spectrometry metabolomics method with high specificity for metabolite identification using all ion …
High-resolution mass spectrometry (HRMS)-based metabolomics approaches have made
significant advances. However, metabolite identification is still a major challenge with …
significant advances. However, metabolite identification is still a major challenge with …
High-throughput metabolomics: isocratic and gradient mass spectrometry-based methods
Metabolomics has emerged in the past decade as a highly attractive and impactful
technique for phenotype-level profiling in diverse biological applications. Most recently, the …
technique for phenotype-level profiling in diverse biological applications. Most recently, the …
Development, characterization and comparisons of targeted and non-targeted metabolomics methods
A Ribbenstedt, H Ziarrusta, JP Benskin - PLoS One, 2018 - journals.plos.org
The potential of a metabolomics method to detect statistically significant perturbations in the
metabolome of an organism is enhanced by excellent analytical precision, unequivocal …
metabolome of an organism is enhanced by excellent analytical precision, unequivocal …