Dealing with the unknown: metabolomics and metabolite atlases

BP Bowen, TR Northen - Journal of the American Society for Mass …, 2010 - Springer
Metabolomics is the comprehensive profiling of the small molecule composition of a
biological sample. Since metabolites are often the indirect products of gene expression, this …

Sample normalization methods in quantitative metabolomics

Y Wu, L Li - Journal of Chromatography A, 2016 - Elsevier
To reveal metabolomic changes caused by a biological event in quantitative metabolomics,
it is critical to use an analytical tool that can perform accurate and precise quantification to …

Data-processing strategies for metabolomics studies

MMWB Hendriks, FA van Eeuwijk, RH Jellema… - TrAC Trends in …, 2011 - Elsevier
Metabolomics studies aim at a better understanding of biochemical processes by studying
relations between metabolites and between metabolites and other types of information (eg …

Advances in computational metabolomics and databases deepen the understanding of metabolisms

H Tsugawa - Current opinion in biotechnology, 2018 - Elsevier
Highlights•Deeper understanding of metabolisms is accelerated by computational
metabolomics.•Advances for metabolite identification, classification, and prediction are …

Metabolite identification for mass spectrometry-based metabolomics using multiple types of correlated ion information

KS Lynn, ML Cheng, YR Chen, C Hsu, A Chen… - Analytical …, 2015 - ACS Publications
Metabolite identification remains a bottleneck in mass spectrometry (MS)-based
metabolomics. Currently, this process relies heavily on tandem mass spectrometry (MS/MS) …

Multiple reaction monitoring profiling (MRM profiling): Small molecule exploratory analysis guided by chemical functionality

Z Xie, CR Ferreira, AA Virequ, RG Cooks - Chemistry and Physics of Lipids, 2021 - Elsevier
Small molecules, including metabolites and lipids, provide information on metabolic
pathways and active biological processes in living organisms. They are often diagnostic of …

Comparison of peak‐picking workflows for untargeted liquid chromatography/high‐resolution mass spectrometry metabolomics data analysis

A Rafiei, L Sleno - Rapid Communications in Mass …, 2015 - Wiley Online Library
RATIONALE Data analysis is a key step in mass spectrometry based untargeted
metabolomics, starting with the generation of generic peak lists from raw liquid …

Development of a liquid chromatography–high resolution mass spectrometry metabolomics method with high specificity for metabolite identification using all ion …

S Naz, H Gallart-Ayala, SN Reinke, C Mathon… - Analytical …, 2017 - ACS Publications
High-resolution mass spectrometry (HRMS)-based metabolomics approaches have made
significant advances. However, metabolite identification is still a major challenge with …

High-throughput metabolomics: isocratic and gradient mass spectrometry-based methods

T Nemkov, JA Reisz, S Gehrke, KC Hansen… - … : Methods and Protocols, 2019 - Springer
Metabolomics has emerged in the past decade as a highly attractive and impactful
technique for phenotype-level profiling in diverse biological applications. Most recently, the …

Development, characterization and comparisons of targeted and non-targeted metabolomics methods

A Ribbenstedt, H Ziarrusta, JP Benskin - PLoS One, 2018 - journals.plos.org
The potential of a metabolomics method to detect statistically significant perturbations in the
metabolome of an organism is enhanced by excellent analytical precision, unequivocal …