[HTML][HTML] Accuracy of genome-enabled prediction in a dairy cattle population using different cross-validation layouts
MA Pérez-Cabal, AI Vazquez, D Gianola… - Frontiers in …, 2012 - frontiersin.org
The impact of extent of genetic relatedness on accuracy of genome-enabled predictions was
assessed using a dairy cattle population and alternative cross-validation (CV) strategies …
assessed using a dairy cattle population and alternative cross-validation (CV) strategies …
[HTML][HTML] Bootstrap study of genome-enabled prediction reliabilities using haplotype blocks across Nordic Red cattle breeds
This study compared the accuracy of genome-enabled prediction models using individual
single nucleotide polymorphisms (SNP) or haplotype blocks as covariates when using either …
single nucleotide polymorphisms (SNP) or haplotype blocks as covariates when using either …
[HTML][HTML] Within-and across-breed genomic prediction using whole-genome sequence and single nucleotide polymorphism panels
OOM Iheshiulor, JA Woolliams, X Yu… - Genetics Selection …, 2016 - Springer
Background Currently, genomic prediction in cattle is largely based on panels of about 54k
single nucleotide polymorphisms (SNPs). However with the decreasing costs of and current …
single nucleotide polymorphisms (SNPs). However with the decreasing costs of and current …
Machine learning methods and predictive ability metrics for genome-wide prediction of complex traits
Genome-wide prediction of complex traits has become increasingly important in animal and
plant breeding, and is receiving increasing attention in human genetics. Most common …
plant breeding, and is receiving increasing attention in human genetics. Most common …
An equation to predict the accuracy of genomic values by combining data from multiple traits, populations, or environments
Predicting the accuracy of estimated genomic values using genome-wide marker
information is an important step in designing training populations. Currently, different …
information is an important step in designing training populations. Currently, different …
[HTML][HTML] Assessing genomic prediction accuracy for Holstein sires using bootstrap aggregation sampling and leave-one-out cross validation
Since the introduction of genome-enabled prediction for dairy cattle in 2009, genomic
selection has markedly changed many aspects of the dairy genetics industry and enhanced …
selection has markedly changed many aspects of the dairy genetics industry and enhanced …
[HTML][HTML] Improving genomic prediction of crossbred and purebred dairy cattle
This study assessed the accuracy and bias of genomic prediction (GP) in purebred Holstein
(H) and Jersey (J) as well as crossbred (H and J) validation cows using different reference …
(H) and Jersey (J) as well as crossbred (H and J) validation cows using different reference …
[HTML][HTML] A function accounting for training set size and marker density to model the average accuracy of genomic prediction
M Erbe, B Gredler, FR Seefried, B Bapst, H Simianer - PLoS One, 2013 - journals.plos.org
Prediction of genomic breeding values is of major practical relevance in dairy cattle
breeding. Deterministic equations have been suggested to predict the accuracy of genomic …
breeding. Deterministic equations have been suggested to predict the accuracy of genomic …
[HTML][HTML] Genomic predictions for crossbred dairy cattle
Genomic evaluations are useful for crossbred as well as purebred populations when
selection is applied to commercial herds. Dairy farmers had already spent more than $1 …
selection is applied to commercial herds. Dairy farmers had already spent more than $1 …
[HTML][HTML] Genomic prediction using preselected DNA variants from a GWAS with whole-genome sequence data in Holstein–Friesian cattle
RF Veerkamp, AC Bouwman, C Schrooten… - Genetics Selection …, 2016 - Springer
Background Whole-genome sequence data is expected to capture genetic variation more
completely than common genotyping panels. Our objective was to compare the proportion of …
completely than common genotyping panels. Our objective was to compare the proportion of …