Metal ions: supporting actors in the playbook of small ribozymes
AE Johnson-Buck, SE McDowell, NG Walter - 2011 - books.rsc.org
Since the 1980s, several small RNA motifs capable of chemical catalysis have been
discovered. These small ribozymes, composed of between approximately 40 and 200 …
discovered. These small ribozymes, composed of between approximately 40 and 200 …
Types and concentrations of metal ions affect local structure and dynamics of RNA
J Wang, Y Xiao - Physical Review E, 2016 - APS
The roles that metal ions play in the structure and dynamics of RNA molecules are long-
standing problems that have been studied extensively but are still not well understood. Here …
standing problems that have been studied extensively but are still not well understood. Here …
Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA
AV Kazantsev, AA Krivenko, NR Pace - RNA, 2009 - rnajournal.cshlp.org
Ribonuclease P (RNase P) is a ribonucleoprotein enzyme that contains a universally
conserved, catalytically active RNA component. RNase P RNA requires divalent metal ions …
conserved, catalytically active RNA component. RNase P RNA requires divalent metal ions …
Metal ion probing of rRNAs: evidence for evolutionarily conserved divalent cation binding pockets
Ribosomes are multifunctional RNP complexes whose catalytic activities absolutely depend
on divalent metal ions. It is assumed that structurally and functionally important metal ions …
on divalent metal ions. It is assumed that structurally and functionally important metal ions …
Rapid Kinetics of Pistol Ribozyme: Insights into Limits to RNA Catalysis
Pistol ribozyme (Psr) is a distinct class of small endonucleolytic ribozymes, which are
important experimental systems for defining fundamental principles of RNA catalysis and …
important experimental systems for defining fundamental principles of RNA catalysis and …
Functional identification of ligands for a catalytic metal ion in group I introns
Many enzymes use metal ions within their active sites to achieve enormous rate
acceleration. Understanding how metal ions mediate catalysis requires elucidation of metal …
acceleration. Understanding how metal ions mediate catalysis requires elucidation of metal …
[HTML][HTML] Cations and hydration in catalytic RNA: molecular dynamics of the hepatitis delta virus ribozyme
MV Krasovska, J Sefcikova, K Réblová, B Schneider… - Biophysical journal, 2006 - cell.com
The hepatitis delta virus (HDV) ribozyme is an RNA enzyme from the human pathogenic
HDV. Cations play a crucial role in self-cleavage of the HDV ribozyme, by promoting both …
HDV. Cations play a crucial role in self-cleavage of the HDV ribozyme, by promoting both …
Nucleic acid enzymes: playing with a fuller deck
GF Joyce - Proceedings of the National Academy of …, 1998 - National Acad Sciences
Poor RNA. Being comprised of only four subunits, and chemically similar subunits at that, it
is a wonder that RNA can have efficient enzymatic activity. Nonetheless, beginning with the …
is a wonder that RNA can have efficient enzymatic activity. Nonetheless, beginning with the …
An unconventional origin of metal-ion rescue and inhibition in the Tetrahymena group I ribozyme reaction
S Shan, D Herschlag - Rna, 2000 - cambridge.org
The presence of catalytic metal ions in RNA active sites has often been inferred from metal-
ion rescue of modified substrates and sometimes from inhibitory effects of alternative metal …
ion rescue of modified substrates and sometimes from inhibitory effects of alternative metal …
Charge density of divalent metal cations determines RNA stability
RNA molecules are exquisitely sensitive to the properties of counterions. The folding
equilibrium of the Tetrahymena ribozyme is measured by nondenaturing gel electrophoresis …
equilibrium of the Tetrahymena ribozyme is measured by nondenaturing gel electrophoresis …