CellCall: integrating paired ligand–receptor and transcription factor activities for cell–cell communication
Y Zhang, T Liu, X Hu, M Wang, J Wang… - Nucleic acids …, 2021 - academic.oup.com
With the dramatic development of single-cell RNA sequencing (scRNA-seq) technologies,
the systematic decoding of cell-cell communication has received great research interest. To …
the systematic decoding of cell-cell communication has received great research interest. To …
CellChat for systematic analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
Recent advances in single-cell sequencing technologies offer an opportunity to explore cell-
cell communication in tissues systematically and with reduced bias. A key challenge is the …
cell communication in tissues systematically and with reduced bias. A key challenge is the …
CellCommuNet: an atlas of cell–cell communication networks from single-cell RNA sequencing of human and mouse tissues in normal and disease states
Q Ma, Q Li, X Zheng, J Pan - Nucleic Acids Research, 2024 - academic.oup.com
Cell− cell communication, as a basic feature of multicellular organisms, is crucial for
maintaining the biological functions and microenvironmental homeostasis of cells, organs …
maintaining the biological functions and microenvironmental homeostasis of cells, organs …
ESICCC as a systematic computational framework for evaluation, selection, and integration of cell-cell communication inference methods
J Luo, M Deng, X Zhang, X Sun - Genome Research, 2023 - genome.cshlp.org
Cell-cell communication (CCC) is critical for determining cell fates and functions in
multicellular organisms. With the advent of single-cell RNA-sequencing (scRNA-seq) and …
multicellular organisms. With the advent of single-cell RNA-sequencing (scRNA-seq) and …
Identify, quantify and characterize cellular communication from single-cell RNA sequencing data with scSeqComm
G Baruzzo, G Cesaro, B Di Camillo - Bioinformatics, 2022 - academic.oup.com
Motivation Recently, single-cell RNA-seq (scRNA-seq) data have been used to study
cellular communication. Most bioinformatics methods infer only the intercellular signaling …
cellular communication. Most bioinformatics methods infer only the intercellular signaling …
New avenues for systematically inferring cell-cell communication: through single-cell transcriptomics data
For multicellular organisms, cell-cell communication is essential to numerous biological
processes. Drawing upon the latest development of single-cell RNA-sequencing (scRNA …
processes. Drawing upon the latest development of single-cell RNA-sequencing (scRNA …
MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
Dysregulated cell-cell communication is a hallmark of many disease phenotypes. Due to
recent advances in single-cell transcriptomics and computational approaches, it is now …
recent advances in single-cell transcriptomics and computational approaches, it is now …
[HTML][HTML] Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data
The growing availability of single-cell data, especially transcriptomics, has sparked an
increased interest in the inference of cell-cell communication. Many computational tools …
increased interest in the inference of cell-cell communication. Many computational tools …
[HTML][HTML] Predicting cell-to-cell communication networks using NATMI
Abstract Development of high throughput single-cell sequencing technologies has made it
cost-effective to profile thousands of cells from diverse samples containing multiple cell …
cost-effective to profile thousands of cells from diverse samples containing multiple cell …
Deciphering ligand–receptor-mediated intercellular communication based on ensemble deep learning and the joint scoring strategy from single-cell transcriptomic …
Background: Cell–cell communication in a tumor microenvironment is vital to tumorigenesis,
tumor progression and therapy. Intercellular communication inference helps understand …
tumor progression and therapy. Intercellular communication inference helps understand …