Genome-wide functional analysis of the cotton transcriptome by creating an integrated EST database

F Xie, G Sun, JW Stiller, B Zhang - PloS one, 2011 - journals.plos.org
A total of 28,432 unique contigs (25,371 in consensus contigs and 3,061 as singletons) were
assembled from all 268,786 cotton ESTs currently available. Several in silico approaches …

Co-expression network analyses identify functional modules associated with development and stress response in Gossypium arboreum

Q You, L Zhang, X Yi, K Zhang, D Yao, X Zhang… - Scientific reports, 2016 - nature.com
Cotton is an economically important crop, essential for the agriculture and textile industries.
Through integrating transcriptomic data, we discovered that multi-dimensional co …

Global analysis of the Gossypium hirsutum L. Transcriptome during leaf senescence by RNA-Seq

M Lin, C Pang, S Fan, M Song, H Wei, S Yu - BMC plant biology, 2015 - Springer
Background Leaf senescence is an important developmental programmed degeneration
process that dramatically affects crop quality and yield. The regulation of senescence is …

Genome-wide transcriptomic analysis of a superior biomass-degrading strain of A. fumigatus revealed active lignocellulose-degrading genes

Y Miao, D Liu, G Li, P Li, Y Xu, Q Shen, R Zhang - BMC genomics, 2015 - Springer
Background Various saprotrophic microorganisms, especially filamentous fungi, can
efficiently degrade lignocellulose that is one of the most abundant natural materials on earth …

Proteomic analyses on xylem sap provides insights into the defense response of Gossypium hirsutum against Verticillium dahliae

J Yang, X Wang, M Xie, G Wang, Z Li, Y Zhang… - Journal of …, 2020 - Elsevier
Verticillium dahliae seriously affects the yield of cotton. Here, V. dahliae infection induced
the significant reduction of protein concentration in cotton xylem sap (CXS), suggesting that …

Transcriptomic and biochemical analysis of upland cotton (Gossypium hirsutum) and a chromosome segment substitution line from G. hirsutum × G. barbadense in response to …

P Li, MH Rashid, T Chen, Q Lu, Q Ge, W Gong, A Liu… - BMC Plant …, 2019 - Springer
Background Verticillium wilt (VW), also known as “cotton cancer,” is one of the most
destructive diseases in global cotton production that seriously impacts fiber yield and quality …

Genome-wide transcriptomic comparison of cotton (Gossypium herbaceum) leaf and root under drought stress

A Ranjan, S Sawant - 3 Biotech, 2015 - Springer
In this study, the 454 pyrosequencing platform was used for analyzing the comparative
transcriptomic profiles of leaf and root tissues of 1-month-old cotton (Gossypium herbaceum) …

Integrative analysis of the lncRNA and mRNA transcriptome revealed genes and pathways potentially involved in the anther abortion of cotton (Gossypium hirsutum l.)

Y Li, T Qin, N Dong, C Wei, Y Zhang, R Sun, T Dong… - Genes, 2019 - mdpi.com
Cotton plays an important role in the economy of many countries. Many studies have
revealed that numerous genes and various metabolic pathways are involved in anther …

The Chalcone Isomerase Family in Cotton: Whole-Genome Bioinformatic and Expression Analyses of the Gossypium barbadense L. Response to Fusarium Wilt …

QL Zu, YY Qu, ZY Ni, K Zheng, Q Chen, QJ Chen - Genes, 2019 - mdpi.com
Chalcone isomerase (CHI) is a key component of phenylalanine metabolism that can
produce a variety of flavonoids. However, little information and no systematic analysis of CHI …

Proteomic identification of differentially expressed proteins in Gossypium thurberi inoculated with cotton Verticillium dahliae

W Fang, D Xie, Y Zhao, Z Tang, W Li, L Nie, S Lv - Plant Science, 2012 - Elsevier
Thurber's cotton (Gossypium thurberi) is the wild relative of cultivated cotton. It is highly
resistant to cotton Verticillium wilt, a disease that significantly affects cotton yield and quality …