Organization and function of the 3D genome

B Bonev, G Cavalli - Nature Reviews Genetics, 2016 - nature.com
Understanding how chromatin is organized within the nucleus and how this 3D architecture
influences gene regulation, cell fate decisions and evolution are major questions in cell …

The three-dimensional organization of mammalian genomes

M Yu, B Ren - Annual review of cell and developmental biology, 2017 - annualreviews.org
Animal development depends on not only the linear genome sequence that embeds millions
of cis-regulatory elements, but also the three-dimensional (3D) chromatin architecture that …

The role of 3D genome organization in development and cell differentiation

H Zheng, W Xie - Nature reviews Molecular cell biology, 2019 - nature.com
In eukaryotes, the genome does not exist as a linear molecule but instead is hierarchically
packaged inside the nucleus. This complex genome organization includes multiscale …

Three-dimensional genome architecture: players and mechanisms

A Pombo, N Dillon - Nature reviews Molecular cell biology, 2015 - nature.com
The different cell types of an organism share the same DNA, but during cell differentiation
their genomes undergo diverse structural and organizational changes that affect gene …

Architectural proteins: regulators of 3D genome organization in cell fate

E Gómez-Díaz, VG Corces - Trends in cell biology, 2014 - cell.com
The relation between alterations in chromatin structure and changes in gene expression
during cell differentiation has served as a paradigm to understand the link between genome …

The birth of the 3D genome during early embryonic development

CB Hug, JM Vaquerizas - Trends in Genetics, 2018 - cell.com
The 3D structure of chromatin in the nucleus is important for the regulation of gene
expression and the correct deployment of developmental programs. The differentiation of …

Understanding the 3D genome: emerging impacts on human disease

A Krumm, Z Duan - Seminars in cell & developmental biology, 2019 - Elsevier
Recent burst of new technologies that allow for quantitatively delineating chromatin structure
has greatly expanded our understanding of how the genome is organized in the three …

Order and disorder: abnormal 3D chromatin organization in human disease

C Anania, DG Lupiáñez - Briefings in functional genomics, 2020 - academic.oup.com
A precise three-dimensional (3D) organization of chromatin is central to achieve the intricate
transcriptional patterns that are required to form complex organisms. Growing evidence …

The second decade of 3C technologies: detailed insights into nuclear organization

A Denker, W De Laat - Genes & development, 2016 - genesdev.cshlp.org
The relevance of three-dimensional (3D) genome organization for transcriptional regulation
and thereby for cellular fate at large is now widely accepted. Our understanding of the …

Resolving the 3D landscape of transcription-linked mammalian chromatin folding

THS Hsieh, C Cattoglio, E Slobodyanyuk, AS Hansen… - Molecular cell, 2020 - cell.com
Whereas folding of genomes at the large scale of epigenomic compartments and
topologically associating domains (TADs) is now relatively well understood, how chromatin …