Insurgence and worldwide diffusion of genomic variants in SARS-CoV-2 genomes

F Comandatore, A Chiodi, P Gabrieli, GB Biffignandi… - bioRxiv, 2020 - biorxiv.org
The SARS-CoV-2 pandemic that we are currently experiencing is exerting a massive toll
both in human lives and economic impact. One of the challenges we must face is to try to …

A snapshot of SARS-CoV-2 genome availability up to 30th March, 2020 and its implications

C Mavian, S Marini, M Prosperi, M Salemi - bioRxiv, 2020 - biorxiv.org
The SARS-CoV-2 pandemic has been growing exponentially, affecting nearly 900 thousand
people and causing enormous distress to economies and societies worldwide. A plethora of …

Emergence of genomic diversity and recurrent mutations in SARS-CoV-2

L Van Dorp, M Acman, D Richard, LP Shaw… - Infection, Genetics and …, 2020 - Elsevier
SARS-CoV-2 is a SARS-like coronavirus of likely zoonotic origin first identified in December
2019 in Wuhan, the capital of China's Hubei province. The virus has since spread globally …

Genetic diversity of SARS-CoV-2 over a one-year period of the COVID-19 pandemic: a global perspective

M Miao, ED Clercq, G Li - Biomedicines, 2021 - mdpi.com
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) caused a global pandemic
of coronavirus disease in 2019 (COVID-19). Genome surveillance is a key method to track …

Large scale genomic analysis of 3067 SARS-CoV-2 genomes reveals a clonal geo-distribution and a rich genetic variations of hotspots mutations

M Laamarti, T Alouane, S Kartti, MW Chemao-Elfihri… - PloS one, 2020 - journals.plos.org
In late December 2019, an emerging viral infection COVID-19 was identified in Wuhan,
China, and became a global pandemic. Characterization of the genetic variants of SARS …

CoVigator—A Knowledge Base for Navigating SARS-CoV-2 Genomic Variants

T Bukur, P Riesgo-Ferreiro, P Sorn, R Gudimella… - Viruses, 2023 - mdpi.com
Background: The outbreak of the severe acute respiratory syndrome coronavirus-2 (SARS-
CoV-2) resulted in the global COVID-19 pandemic. The urgency for an effective SARS-CoV …

COV2Var, a function annotation database of SARS-CoV-2 genetic variation

Y Feng, J Yi, L Yang, Y Wang, J Wen… - Nucleic Acids …, 2024 - academic.oup.com
The COVID-19 pandemic, caused by the coronavirus SARS-CoV-2, has resulted in the loss
of millions of lives and severe global economic consequences. Every time SARS-CoV-2 …

RCoV19: a one-stop hub for SARS-CoV-2 genome data integration, variant monitoring, and risk pre-warning

C Li, L Ma, D Zou, R Zhang, X Bai, L Li… - Genomics …, 2023 - academic.oup.com
Abstract The Resource for Coronavirus 2019 (RCoV19) is an open-access information
resource dedicated to providing valuable data on the genomes, mutations, and variants of …

Data-driven identification of SARS-CoV-2 subpopulations using PhenoGraph and binary-coded genomic data

ZK Yang, L Pan, Y Zhang, H Luo… - Briefings in …, 2021 - academic.oup.com
For epidemic prevention and control, the identification of SARS-CoV-2 subpopulations
sharing similar micro-epidemiological patterns and evolutionary histories is necessary for a …

Identification of novel missense mutations in a large number of recent SARS-CoV-2 genome sequences

HY Cai, KK Cai, J Li - 2020 - researchsquare.com
Background. SARS-CoV-2 infection has spread to over 200 countries since it was first
reported in December of 2019. Significant country-specific variations in infection and …