Molecular signatures of natural selection

R Nielsen - Annu. Rev. Genet., 2005 - annualreviews.org
There is an increasing interest in detecting genes, or genomic regions, that have been
targeted by natural selection. The interest stems from a basic desire to learn more about …

Detecting the form of selection from DNA sequence data

SP Otto - Trends in Genetics, 2000 - cell.com
Clues to our evolutionary history lie hidden within DNA sequence data. One of the great
challenges facing population geneticists is to identify and accurately interpret these clues …

Detecting natural selection in genomic data

JJ Vitti, SR Grossman, PC Sabeti - Annual review of genetics, 2013 - annualreviews.org
The past fifty years have seen the development and application of numerous statistical
methods to identify genomic regions that appear to be shaped by natural selection. These …

“Reverse ecology” and the power of population genomics

YF Li, JC Costello, AK Holloway, MW Hahn - Evolution, 2008 - academic.oup.com
Rapid and inexpensive sequencing technologies are making it possible to collect whole
genome sequence data on multiple individuals from a population. This type of data can be …

Statistical tests of selective neutrality in the age of genomics

R Nielsen - Heredity, 2001 - nature.com
Examining genomic data for traces of selection provides a powerful tool for identifying
genomic regions of functional importance. Many methods for identifying such regions have …

Detecting positive selection in the genome

TR Booker, BC Jackson, PD Keightley - BMC biology, 2017 - Springer
Population geneticists have long sought to understand the contribution of natural selection
to molecular evolution. A variety of approaches have been proposed that use population …

Gene expression levels are a target of recent natural selection in the human genome

S Kudaravalli, JB Veyrieras, BE Stranger… - Molecular biology …, 2009 - academic.oup.com
Abstract Changes in gene expression may represent an important mode of human
adaptation. However, to date, there are relatively few known examples in which selection …

Inference of natural selection from interspersed genomic elements based on polymorphism and divergence

I Gronau, L Arbiza, J Mohammed… - Molecular biology and …, 2013 - academic.oup.com
Complete genome sequences contain valuable information about natural selection, but this
information is difficult to access for short, widely scattered noncoding elements such as …

Simultaneous inference of selection and population growth from patterns of variation in the human genome

SH Williamson, R Hernandez… - Proceedings of the …, 2005 - National Acad Sciences
Natural selection and demographic forces can have similar effects on patterns of DNA
polymorphism. Therefore, to infer selection from samples of DNA sequences, one must …

Joint analysis of demography and selection in population genetics: where do we stand and where could we go?

J Li, H Li, M Jakobsson, SEN Li, PER SjÖDin… - Molecular …, 2012 - Wiley Online Library
Teasing apart the effects of selection and demography on genetic polymorphism remains
one of the major challenges in the analysis of population genomic data. The traditional …