ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data
V Gardeux, FPA David, A Shajkofci, PC Schwalie… - …, 2017 - academic.oup.com
Motivation Single-cell RNA-sequencing (scRNA-seq) allows whole transcriptome profiling of
thousands of individual cells, enabling the molecular exploration of tissues at the cellular …
thousands of individual cells, enabling the molecular exploration of tissues at the cellular …
Granatum: a graphical single-cell RNA-Seq analysis pipeline for genomics scientists
X Zhu, TK Wolfgruber, A Tasato, C Arisdakessian… - Genome medicine, 2017 - Springer
Background Single-cell RNA sequencing (scRNA-Seq) is an increasingly popular platform
to study heterogeneity at the single-cell level. Computational methods to process scRNA …
to study heterogeneity at the single-cell level. Computational methods to process scRNA …
Cerebro: interactive visualization of scRNA-seq data
R Hillje, PG Pelicci, L Luzi - Bioinformatics, 2020 - academic.oup.com
Despite the growing availability of sophisticated bioinformatic methods for the analysis of
single-cell RNA-seq data, few tools exist that allow biologists without extensive bioinformatic …
single-cell RNA-seq data, few tools exist that allow biologists without extensive bioinformatic …
Single-cell RNA-seq technologies and related computational data analysis
G Chen, B Ning, T Shi - Frontiers in genetics, 2019 - frontiersin.org
Single-cell RNA sequencing (scRNA-seq) technologies allow the dissection of gene
expression at single-cell resolution, which greatly revolutionizes transcriptomic studies. A …
expression at single-cell resolution, which greatly revolutionizes transcriptomic studies. A …
alona: a web server for single-cell RNA-seq analysis
O Franzén, JLM Björkegren - Bioinformatics, 2020 - academic.oup.com
Single-cell RNA sequencing (scRNA-seq) is a technology to measure gene expression in
single cells. It has enabled discovery of new cell types and established cell type atlases of …
single cells. It has enabled discovery of new cell types and established cell type atlases of …
SingleCAnalyzer: interactive analysis of single cell RNA-Seq data on the cloud
C Prieto, D Barrios, A Villaverde - Frontiers in bioinformatics, 2022 - frontiersin.org
Single-cell RNA sequencing (scRNA-Seq) enables researchers to quantify the
transcriptomes of individual cells. The capacity of researchers to perform this type of analysis …
transcriptomes of individual cells. The capacity of researchers to perform this type of analysis …
scRNASeqDB: a database for RNA-Seq based gene expression profiles in human single cells
Single-cell RNA sequencing (scRNA-Seq) is rapidly becoming a powerful tool for high-
throughput transcriptomic analysis of cell states and dynamics at the single cell level. Both …
throughput transcriptomic analysis of cell states and dynamics at the single cell level. Both …
Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database
As single-cell RNA-sequencing (scRNA-seq) datasets have become more widespread the
number of tools designed to analyse these data has dramatically increased. Navigating the …
number of tools designed to analyse these data has dramatically increased. Navigating the …
Quantitative single-cell transcriptomics
C Ziegenhain, B Vieth, S Parekh… - Briefings in …, 2018 - academic.oup.com
Single-cell RNA sequencing (scRNA-seq) is currently transforming our understanding of
biology, as it is a powerful tool to resolve cellular heterogeneity and molecular networks …
biology, as it is a powerful tool to resolve cellular heterogeneity and molecular networks …
Asc-Seurat: analytical single-cell Seurat-based web application
Background Single-cell RNA sequencing (scRNA-seq) has revolutionized the study of
transcriptomes, arising as a powerful tool for discovering and characterizing cell types and …
transcriptomes, arising as a powerful tool for discovering and characterizing cell types and …