Expression partitioning between genes duplicated by polyploidy under abiotic stress and during organ development

Z Liu, KL Adams - Current Biology, 2007 - cell.com
Allopolyploidy has been a prominent mode of speciation and a recurrent process during
plant evolution and has contributed greatly to the large number of duplicated genes in plant …

Cotton pan-genome retrieves the lost sequences and genes during domestication and selection

J Li, D Yuan, P Wang, Q Wang, M Sun, Z Liu, H Si, Z Xu… - Genome biology, 2021 - Springer
Background Millennia of directional human selection has reshaped the genomic architecture
of cultivated cotton relative to wild counterparts, but we have limited understanding of the …

The genomic basis of geographic differentiation and fiber improvement in cultivated cotton

S He, G Sun, X Geng, W Gong, P Dai, Y Jia, W Shi… - Nature Genetics, 2021 - nature.com
Large-scale genomic surveys of crop germplasm are important for understanding the
genetic architecture of favorable traits. The genomic basis of geographic differentiation and …

Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies

C Xu, Y Bai, X Lin, N Zhao, L Hu, Z Gong… - Molecular biology …, 2014 - academic.oup.com
Hybridization and polyploidization are prominent processes in plant evolution. Hybrids and
allopolyploids typically exhibit radically altered gene expression patterns relative to their …

Genomic and meiotic changes accompanying polyploidization

F Blasio, P Prieto, M Pradillo, T Naranjo - Plants, 2022 - mdpi.com
Hybridization and polyploidy have been considered as significant evolutionary forces in
adaptation and speciation, especially among plants. Interspecific gene flow generates novel …

Homoeolog expression bias and expression level dominance in allopolyploids

CE Grover, JP Gallagher, EP Szadkowski, MJ Yoo… - New Phytologist, 2012 - JSTOR
Polyploidy is now recognized as a characteristic feature of all angiosperm genomes (Jiao et
al., 2011), and remains an important speciation process today (Wendel, 2000; Comai, 2005; …

Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication

M Wang, L Tu, M Lin, Z Lin, P Wang, Q Yang, Z Ye… - Nature …, 2017 - nature.com
Comparative population genomics offers an excellent opportunity for unraveling the genetic
history of crop domestication. Upland cotton (Gossypium hirsutum) has long been an …

Recent advances and future perspectives in cotton research

G Huang, JQ Huang, XY Chen… - Annual review of plant …, 2021 - annualreviews.org
Cotton is not only the world's most important natural fiber crop, but it is also an ideal system
in which to study genome evolution, polyploidization, and cell elongation. With the assembly …

Homoeologous exchanges, segmental allopolyploidy, and polyploid genome evolution

AS Mason, JF Wendel - Frontiers in Genetics, 2020 - frontiersin.org
Polyploidy is a major force in plant evolution and speciation. In newly formed allopolyploids,
pairing between related chromosomes from different subgenomes (homoeologous …

Genomic and expression plasticity of polyploidy

S Jackson, ZJ Chen - Current opinion in plant biology, 2010 - Elsevier
Polyploidy or whole genome duplication (WGD) occurs throughout the evolutionary history
of many plants and some animals, including crops such as wheat, cotton, and sugarcane …