[HTML][HTML] Higher-order chromosomal structures mediate genome function

I Jerković, Q Szabo, F Bantignies, G Cavalli - Journal of Molecular Biology, 2020 - Elsevier
How chromosomes are organized within the tridimensional space of the nucleus and how
can this organization affect genome function have been long-standing questions on the path …

[HTML][HTML] Multiscale 3D genome rewiring during mouse neural development

B Bonev, NM Cohen, Q Szabo, L Fritsch… - Cell, 2017 - cell.com
Chromosome conformation capture technologies have revealed important insights into
genome folding. Yet, how spatial genome architecture is related to gene expression and cell …

[HTML][HTML] 3C and 3C-based techniques: the powerful tools for spatial genome organization deciphering

J Han, Z Zhang, K Wang - Molecular Cytogenetics, 2018 - Springer
It is well known that the chromosomes are organized in the nucleus and this spatial
arrangement of genome play a crucial role in gene regulation and genome stability. Different …

[HTML][HTML] The hierarchy of the 3D genome

JH Gibcus, J Dekker - Molecular cell, 2013 - cell.com
Mammalian genomes encode genetic information in their linear sequence, but appropriate
expression of their genes requires chromosomes to fold into complex three-dimensional …

[HTML][HTML] Genome-scale imaging of the 3D organization and transcriptional activity of chromatin

JH Su, P Zheng, SS Kinrot, B Bintu, X Zhuang - Cell, 2020 - cell.com
The 3D organization of chromatin regulates many genome functions. Our understanding of
3D genome organization requires tools to directly visualize chromatin conformation in its …

The spatial organization of transcriptional control

A Hafner, A Boettiger - Nature Reviews Genetics, 2023 - nature.com
In animals, the sequences for controlling gene expression do not concentrate just at the
transcription start site of genes, but are frequently thousands to millions of base pairs distal …

[HTML][HTML] 3C-based technologies to study the shape of the genome

W de Laat, J Dekker - Methods (San Diego, Calif.), 2012 - ncbi.nlm.nih.gov
Ever since microscopes enabled visualization of the organization of eukaryotic cells,
scientists have been fascinated by the function and structure of their largest organelle, the …

An overview of genome organization and how we got there: from FISH to Hi-C

J Fraser, I Williamson, WA Bickmore… - … and Molecular Biology …, 2015 - Am Soc Microbiol
In humans, nearly two meters of genomic material must be folded to fit inside each
micrometer-scale cell nucleus while remaining accessible for gene transcription, DNA …

Genome structure determination via 3C-based data integration by the Integrative Modeling Platform

D Bau, MA Marti-Renom - Methods, 2012 - Elsevier
The three-dimensional (3D) architecture of a genome determines the spatial localization of
regulatory elements and the genes they regulate. Thus, elucidating the 3D structure of a …

[HTML][HTML] Resolving the 3D landscape of transcription-linked mammalian chromatin folding

THS Hsieh, C Cattoglio, E Slobodyanyuk, AS Hansen… - Molecular cell, 2020 - cell.com
Whereas folding of genomes at the large scale of epigenomic compartments and
topologically associating domains (TADs) is now relatively well understood, how chromatin …