Genome-wide mapping of yeast RNA polymerase II termination

P Schaughency, J Merran, JL Corden - PLoS genetics, 2014 - journals.plos.org
Yeast RNA polymerase II (Pol II) terminates transcription of coding transcripts through the
polyadenylation (pA) pathway and non-coding transcripts through the non-polyadenylation …

Genome-wide analysis of RNA polymerase II termination at protein-coding genes

C Baejen, J Andreani, P Torkler, S Battaglia, B Schwalb… - Molecular cell, 2017 - cell.com
At the end of protein-coding genes, RNA polymerase (Pol) II undergoes a concerted
transition that involves 3′-processing of the pre-mRNA and transcription termination. Here …

Budding yeast RNA polymerases I and II employ parallel mechanisms of transcriptional termination

J Kawauchi, H Mischo, P Braglia… - Genes & …, 2008 - genesdev.cshlp.org
Both RNA polymerase I and II (Pol I and Pol II) in budding yeast employ a functionally
homologous “torpedo-like” mechanism to promote transcriptional termination. For two well …

cis-and trans-Acting determinants of transcription termination by yeast RNA polymerase II

EJ Steinmetz, SBH Ng, JP Cloute… - Molecular and cellular …, 2006 - Am Soc Microbiol
Most eukaryotic genes are transcribed by RNA polymerase II (Pol II), including those that
produce mRNAs and many noncoding functional RNAs. Proper expression of these genes …

Transcriptome-Wide Binding Sites for Components of the Saccharomyces cerevisiae Non-Poly(A) Termination Pathway: Nrd1, Nab3, and Sen1

TJ Creamer, MM Darby, N Jamonnak… - PLoS …, 2011 - journals.plos.org
RNA polymerase II synthesizes a diverse set of transcripts including both protein-coding and
non-coding RNAs. One major difference between these two classes of transcripts is the …

Defining the influence of the A12. 2 subunit on transcription elongation and termination by RNA polymerase I in vivo

AM Clarke, AK Huffines, YJK Edwards, CM Petit… - Genes, 2021 - mdpi.com
Saccharomyces cerevisiae has approximately 200 copies of the 35S rDNA gene, arranged
tandemly on chromosome XII. This gene is transcribed by RNA polymerase I (Pol I) and the …

Fail-safe transcriptional termination for protein-coding genes in S. cerevisiae

AG Rondón, HE Mischo, J Kawauchi, NJ Proudfoot - Molecular cell, 2009 - cell.com
Transcription termination of RNA polymerase II (Pol II) on protein-coding genes in S.
cerevisiae relies on pA site recognition by 3′ end processing factors. Here we demonstrate …

AT-rich sequence elements promote nascent transcript cleavage leading to RNA polymerase II termination

E White, K Kamieniarz-Gdula, MJ Dye… - Nucleic acids …, 2013 - academic.oup.com
Abstract RNA Polymerase II (Pol II) termination is dependent on RNA processing signals as
well as specific terminator elements located downstream of the poly (A) site. One of the two …

Sequence context effects on oligo (dT) termination signal recognition by Saccharomyces cerevisiae RNA polymerase III

P Braglia, R Percudani, G Dieci - Journal of Biological Chemistry, 2005 - ASBMB
Eukaryotic RNA polymerase (Pol) III terminates transcription at short runs of T residues in the
coding DNA strand. By genomic analysis, we found that T 5 and T 4 are the shortest Pol III …

Conserved DNA sequence features underlie pervasive RNA polymerase pausing

M Gajos, O Jasnovidova, A van Bömmel… - Nucleic acids …, 2021 - academic.oup.com
Pausing of transcribing RNA polymerase is regulated and creates opportunities to control
gene expression. Research in metazoans has so far mainly focused on RNA polymerase II …