[HTML][HTML] Direct Detection of poliovirus and Nanopore Sequencing (DDNS)-Stool

A Shaw, C Troman, J Akello, E Bujaki, M Majumdar… - 2024 - slack.protocols.io
This protocol is an update from the protocol described in the paper" Rapid and sensitive
direct detection and identification of poliovirus from stool and environmental surveillance …

DDNS protocol v2

A Shaw, M Majumdar, C Troman, J Akello, A OToole… - 2023 - protocols.io
This protocol is an update from the protocol described in the paper" Rapid and sensitive
direct detection and identification of poliovirus from stool and environmental surveillance …

Nested VP1 PCR and Nanopore Sequencing from Stool and ES Samples v1. 2

A Shaw, M Majumdar, C Troman, A OToole, J Akello… - 2022 - protocols.io
This protocol is updated from the protocol described in the paper" Rapid and sensitive direct
detection and identification of poliovirus from stool and environmental surveillance samples …

Rapid and sensitive direct detection and identification of poliovirus from stool and environmental surveillance samples by use of nanopore sequencing

AG Shaw, M Majumdar, C Troman… - Journal of clinical …, 2020 - Am Soc Microbiol
Global poliovirus surveillance involves virus isolation from stool and environmental samples,
intratypic differential (ITD) by PCR, and sequencing of the VP1 region to distinguish vaccine …

[HTML][HTML] Sensitive poliovirus detection using nested PCR and nanopore sequencing: A prospective validation study

AG Shaw, TK Mampuela, EL Lofiko, C Pratt… - Nature …, 2023 - nature.com
Timely detection of outbreaks is needed for poliovirus eradication, but gold standard
detection in the Democratic Republic of the Congo takes 30 days (median). Direct molecular …

Early detection of vaccine-derived poliovirus outbreaks using nested PCR and nanopore sequencing in the Democratic Republic of Congo, 2021-2022

A Shaw, TK Mampuela, EL Lofiko, C Pratt, C Troman… - 2023 - researchsquare.com
Delayed detection of poliovirus outbreaks is a major threat to polio eradication. Direct
molecular Detection and Nanopore Sequencing (DDNS) of stool samples shows promise as …

[HTML][HTML] Poliovirus direct detection and nanopore sequencing (DDNS) FAQs

A Shaw, C Troman, J Akello, E Bujaki, M Majumdar… - 2023 - protocols.io
This short FAQ document summarises the poliovirus direct detection and nanopore
sequencing (DDNS) protocol, the equipment and reagents required, the cost and staff-time …

Quality guidance on the use of run controls for direct detection of poliovirus by nanopore sequencing

J Akello, M Majumdar, A Shaw, C Troman, E Bujaki… - 2023 - protocols.io
This document describes the laboratory process for the use of run controls (positive and
negative controls) for performing direct detection of poliovirus by nanopore sequencing …

Automated detection and classification of polioviruses from nanopore sequencing reads using piranha

Á O'Toole, R Colquhoun, C Ansley, C Troman… - Virus …, 2024 - academic.oup.com
Widespread surveillance, rapid detection, and appropriate intervention will be critical for
successful eradication of poliovirus. Using deployable next-generation sequencing (NGS) …

Comparison of eleven RNA extraction methods for poliovirus direct molecular detection in stool samples

JO Akello, E Bujaki, AG Shaw, A Khurshid… - Microbiology …, 2023 - Am Soc Microbiol
Direct detection by PCR of poliovirus RNA in stool samples provides a rapid diagnostic and
surveillance tool that can replace virus isolation by cell culture in global polio surveillance …