[HTML][HTML] IDbSV: an open-access repository for monitoring sars-cov-2 variations and evolution

A Essabbar, S Kartti, T Alouane, M Hakmi… - Frontiers in …, 2021 - frontiersin.org
Ending COVID-19 pandemic requires a collaborative understanding of SARS-CoV-2 and
COVID-19 mechanisms. Yet, the evolving nature of coronaviruses results in a continuous …

The global landscape of SARS-CoV-2 genomes, variants, and haplotypes in 2019nCoVR

S Song, L Ma, D Zou, D Tian, C Li, J Zhu… - Genomics …, 2020 - academic.oup.com
Abstract On January 22, 2020, China National Center for Bioinformation (CNCB) released
the 2019 Novel Coronavirus Resource (2019nCoVR), an open-access information resource …

[HTML][HTML] Mutational signatures and heterogeneous host response revealed via large-scale characterization of SARS-CoV-2 genomic diversity

A Graudenzi, D Maspero, F Angaroni, R Piazza… - Iscience, 2021 - cell.com
To dissect the mechanisms underlying the inflation of variants in the Severe Acute
Respiratory Syndrome CoronaVirus 2 (SARS-CoV-2) genome, we present a large-scale …

VariantHunter: a method and tool for fast detection of emerging SARS-CoV-2 variants

P Pinoli, A Canakoglu, S Ceri, M Chiara, E Ferrandi… - Database, 2023 - academic.oup.com
With the progression of the COVID-19 pandemic, large datasets of SARS-CoV-2 genome
sequences were collected to closely monitor the evolution of the virus and identify the novel …

Distinct mutations and lineages of SARS-CoV-2 virus in the early phase of COVID-19 pandemic and subsequent global expansion

Y Chen, S Li, W Wu, S Geng, M Mao - bioRxiv, 2021 - biorxiv.org
A novel coronavirus, SARS-CoV-2, has caused over 85 million cases and over 1.8 million
deaths worldwide since it occurred twelve months ago in Wuhan, China. Here we …

[HTML][HTML] Genetic diversity of SARS-CoV-2 over a one-year period of the COVID-19 pandemic: a global perspective

M Miao, ED Clercq, G Li - Biomedicines, 2021 - mdpi.com
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) caused a global pandemic
of coronavirus disease in 2019 (COVID-19). Genome surveillance is a key method to track …

[HTML][HTML] Intra-host variation and evolutionary dynamics of SARS-CoV-2 populations in COVID-19 patients

Y Wang, D Wang, L Zhang, W Sun, Z Zhang, W Chen… - Genome Medicine, 2021 - Springer
Abstract Background Since early February 2021, the causative agent of COVID-19, SARS-
CoV-2, has infected over 104 million people with more than 2 million deaths according to …

ViruClust: direct comparison of SARS-CoV-2 genomes and genetic variants in space and time

L Cilibrasi, P Pinoli, A Bernasconi, A Canakoglu… - …, 2022 - academic.oup.com
Motivation The ongoing evolution of SARS-CoV-2 and the rapid emergence of variants of
concern at distinct geographic locations have relevant implications for the implementation of …

A snapshot of SARS-CoV-2 genome availability up to 30th March, 2020 and its implications

C Mavian, S Marini, M Prosperi, M Salemi - bioRxiv, 2020 - biorxiv.org
The SARS-CoV-2 pandemic has been growing exponentially, affecting nearly 900 thousand
people and causing enormous distress to economies and societies worldwide. A plethora of …

[HTML][HTML] Surveillance for variants of SARS-CoV-2 to inform risk assessments

HA Cohen, S Mesfin, J Ikejezie… - Bulletin of the World …, 2023 - ncbi.nlm.nih.gov
Since the beginning of the coronavirus disease 2019 (COVID-19) pandemic, numerous
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants have emerged …