Integrating single-cell multi-omics to decipher host-pathogen interactions

O Dietrich - 2024 - opus.bibliothek.uni-wuerzburg.de
Interactions between host and pathogen determine the development, progression and
outcomes of disease. Medicine benefits from better descriptions of these interactions …

Host-microbiome interactions in the era of single-cell biology

PV Sharma, CA Thaiss - Frontiers in Cellular and Infection …, 2020 - frontiersin.org
Microbes are the most prevalent form of life yet also the least well-understood in terms of
their diversity. Due to a greater appreciation of their role in modulating host physiology …

Unraveling heterogeneity in transcriptome and its regulation through single-cell multi-omics technologies

QR Xing, NO Cipta, K Hamashima, YC Liou… - Frontiers in …, 2020 - frontiersin.org
Cellular heterogeneity plays a pivotal role in tissue homeostasis and the disease
development of multicellular organisms. To deconstruct the heterogeneity, a multitude of …

Multi-omics integration reveals only minor long-term molecular and functional sequelae in immune cells of individuals recovered from COVID-19

Z Liu, G Kilic, W Li, O Bulut, MK Gupta… - Frontiers in …, 2022 - frontiersin.org
The majority of COVID-19 patients experience mild to moderate disease course and recover
within a few weeks. An increasing number of studies characterized the long-term changes in …

Multi-omics strategies uncover host–pathogen interactions

MM Khan, O Ernst, NP Manes, BL Oyler… - ACS infectious …, 2019 - ACS Publications
With the success of the Human Genome Project, large-scale systemic projects became a
reality that enabled rapid development of the systems biology field. Systems biology …

[HTML][HTML] Unraveling the intricacies of host-pathogen interaction through single-cell genomics

E Gioacchino, K Vandelannoote, AA Ruberto… - Microbes and …, 2024 - Elsevier
Single-cell genomics provide researchers with tools to assess host-pathogen interactions at
a resolution previously inaccessible. Transcriptome analysis, epigenome analysis, and …

Delineation of signaling routes that underlie differences in macrophage phenotypic states

T Totu, J Bossart, K Hast, C Li, M Rottmar, B Sobottka… - bioRxiv, 2024 - biorxiv.org
Macrophages represent a major immune cell type in tumor microenvironments, they exist in
multiple functional states and are of a strong interest for therapeutic reprogramming. While …

Platform for Single-Cell Dual RNA Sequencing of Host-Pathogen Interactions

R Harouaka, A Fisher, R Wyllie, B David, P Jensen - 2021 - osti.gov
The aim of this project was to advance single-cell RNA-Seq methods toward the
establishment of a platform that may be used to simultaneously interrogate the gene …

Single-cell multi-omics analysis of the immune response in COVID-19

E Stephenson, G Reynolds, RA Botting… - Nature medicine, 2021 - nature.com
Abstract Analysis of human blood immune cells provides insights into the coordinated
response to viral infections such as severe acute respiratory syndrome coronavirus 2, which …

P844: GLOBAL CHARACTERIZATION OF MONOCYTE REVEALS A STRESS SIGNATURE INDUCED BY MULTIPLE MYELOMA BY SINGLE-CELL RNA …

J Cui, W Yan, J Xu, L Qiu, G An - HemaSphere, 2023 - journals.lww.com
Background: A growing body of evidence has indicated impaired function or compositional
changes of monocytes in inflammatory disorders, such as acute respiratory syndrome and …