Reliabilities of estimated breeding values in models with metafounders

M Bermann, I Aguilar, D Lourenco, I Misztal… - Genetics Selection …, 2023 - Springer
Background Reliabilities of best linear unbiased predictions (BLUP) of breeding values are
defined as the squared correlation between true and estimated breeding values and are …

Bias and accuracy of dairy sheep evaluations using BLUP and SSGBLUP with metafounders and unknown parent groups

FL Macedo, OF Christensen, JM Astruc… - Genetics Selection …, 2020 - Springer
Background Bias has been reported in genetic or genomic evaluations of several species.
Common biases are systematic differences between averages of estimated and true …

Genomic prediction of breeding values using previously estimated SNP variances

MPL Calus, C Schrooten, RF Veerkamp - Genetics Selection Evolution, 2014 - Springer
Background Genomic prediction requires estimation of variances of effects of single
nucleotide polymorphisms (SNPs), which is computationally demanding, and uses these …

Comparison between estimation of breeding values and fixed effects using Bayesian and empirical BLUP estimation under selection on parents and missing pedigree …

FS Schenkel, LR Schaeffer… - Genetics Selection …, 2002 - gse-journal.org
Bayesian (via Gibbs sampling) and empirical BLUP (EBLUP) estimation of fixed effects and
breeding values were compared by simulation. Combinations of two simulation models (with …

[HTML][HTML] Breeding value reliabilities for multiple-trait single-step genomic best linear unbiased predictor

HB Zaabza, M Taskinen, EA Mäntysaari… - Journal of Dairy …, 2022 - Elsevier
Approximate multistep methods to calculate reliabilities for estimated breeding values in
large genetic evaluations were developed for single-trait (ST-R 2 A) and multitrait (MT-R 2 A) …

Effects of ignoring inbreeding in model‐based accuracy for BLUP and SSGBLUP

I Aguilar, EN Fernandez, A Blasco… - Journal of animal …, 2020 - Wiley Online Library
Abstract Model‐based accuracy, defined as the theoretical correlation between true and
estimated breeding value, can be obtained for each individual as a function of its prediction …

Semi-parametric estimates of population accuracy and bias of predictions of breeding values and future phenotypes using the LR method

A Legarra, A Reverter - Genetics Selection Evolution, 2018 - Springer
Background Cross-validation tools are used increasingly to validate and compare genetic
evaluation methods but analytical properties of cross-validation methods are rarely …

The importance of information on relatives for the prediction of genomic breeding values and the implications for the makeup of reference data sets in livestock …

SA Clark, JM Hickey, HD Daetwyler… - Genetics Selection …, 2012 - Springer
Background The theory of genomic selection is based on the prediction of the effects of
genetic markers in linkage disequilibrium with quantitative trait loci. However, genomic …

[HTML][HTML] Estimation of individual animal SNP-BLUP reliability using full Monte Carlo sampling

HB Zaabza, EA Mäntysaari, I Strandén - JDS communications, 2021 - Elsevier
Calculation of individual animal reliability of estimated genomic breeding value by SNP-
BLUP requires inversion of the mixed model equations (MME). When the SNP-BLUP model …

Modeling missing pedigree in single-step genomic BLUP

HL Bradford, Y Masuda, PM VanRaden, A Legarra… - Journal of Dairy …, 2019 - Elsevier
The objective was to compare methods of modeling missing pedigree in single-step
genomic BLUP (ssGBLUP). Options for modeling missing pedigree included ignoring the …