Synthetic gene circuits: design with directed evolution

EL Haseltine, FH Arnold - Annu. Rev. Biophys. Biomol. Struct., 2007 - annualreviews.org
Synthetic circuits offer great promise for generating insights into nature's underlying design
principles or forward engineering novel biotechnology applications. However, construction …

A network approach to genetic circuit designs

M Crowther, A Wipat, Á Goñi-Moreno - ACS synthetic biology, 2022 - ACS Publications
As genetic circuits become more sophisticated, the size and complexity of data about their
designs increase. The data captured goes beyond genetic sequences alone; information …

Design patterns for engineering genetic stability

HI Son, A Weiss, L You - Current opinion in biomedical engineering, 2021 - Elsevier
The past 20 years have witnessed enormous progress in synthetic biology in the
development of engineered cells for diverse applications, including biomanufacturing …

Foundations for the design and implementation of synthetic genetic circuits

AL Slusarczyk, A Lin, R Weiss - Nature Reviews Genetics, 2012 - nature.com
Synthetic gene circuits are designed to program new biological behaviour, dynamics and
logic control. For all but the simplest synthetic phenotypes, this requires a structured …

Next-generation synthetic gene networks

TK Lu, AS Khalil, JJ Collins - Nature biotechnology, 2009 - nature.com
Synthetic biology is focused on the rational construction of biological systems based on
engineering principles. During the field's first decade of development, significant progress …

Iterative plug-and-play methodology for constructing and modifying synthetic gene networks

KD Litcofsky, RB Afeyan, RJ Krom, AS Khalil… - Nature …, 2012 - nature.com
We present a methodology for the design, construction and modification of synthetic gene
networks. This method emphasizes post-assembly modification of constructs based on …

Dual selection of a genetic switch by a single selection marker

Y Nomura, Y Yokobayashi - Biosystems, 2007 - Elsevier
Forward engineering of synthetic genetic circuits in living cells is expected to deliver various
applications in biotechnology and medicine and to provide valuable insights into the design …

Designing synthetic biology

CM Agapakis - ACS synthetic biology, 2014 - ACS Publications
Synthetic biology is frequently defined as the application of engineering design principles to
biology. Such principles are intended to streamline the practice of biological engineering, to …

Evolutionary design of genetic circuits and cell-cell communications

Y Yokobayashi, CH Collins, JR Leadbetter… - Advances in Complex …, 2003 - World Scientific
Synthetic genetic circuits are artificial networks of transcriptional control elements inserted
into living cells in order to'program'cellular behavior. We can extend this application to …

Engineering genetic circuits: advancements in genetic design automation tools and standards for synthetic biology

L Buecherl, CJ Myers - Current opinion in microbiology, 2022 - Elsevier
Highlights•Synthetic biology aims to apply engineering principles in biology.•Insufficient part
libraries, standards, and software are challenges to the field.•Working on the challenges will …