[HTML][HTML] Genomic basis for RNA alterations in cancer
PCAWG Transcriptome Core Group Calabrese Claudia … - Nature, 2020 - nature.com
Transcript alterations often result from somatic changes in cancer genomes. Various forms of
RNA alterations have been described in cancer, including overexpression, altered splicing …
RNA alterations have been described in cancer, including overexpression, altered splicing …
[HTML][HTML] The repertoire of mutational signatures in human cancer
Somatic mutations in cancer genomes are caused by multiple mutational processes, each of
which generates a characteristic mutational signature. Here, as part of the Pan-Cancer …
which generates a characteristic mutational signature. Here, as part of the Pan-Cancer …
[HTML][HTML] Signatures of mutation and selection in the cancer genome
GR Bignell, CD Greenman, H Davies, AP Butler… - Nature, 2010 - nature.com
The cancer genome is moulded by the dual processes of somatic mutation and selection.
Homozygous deletions in cancer genomes occur over recessive cancer genes, where they …
Homozygous deletions in cancer genomes occur over recessive cancer genes, where they …
Cancer and genomics
PA Futreal, A Kasprzyk, E Birney, JC Mullikin… - Nature, 2001 - nature.com
Identification of the genes that cause oncogenesis is a central aim of cancer research. We
searched the proteins predicted from the draft human genome sequence for paralogues of …
searched the proteins predicted from the draft human genome sequence for paralogues of …
[HTML][HTML] Patterns of somatic structural variation in human cancer genomes
A key mutational process in cancer is structural variation, in which rearrangements delete,
amplify or reorder genomic segments that range in size from kilobases to whole …
amplify or reorder genomic segments that range in size from kilobases to whole …
The landscape of somatic copy-number alteration across human cancers
R Beroukhim, CH Mermel, D Porter, G Wei… - Nature, 2010 - nature.com
A powerful way to discover key genes with causal roles in oncogenesis is to identify
genomic regions that undergo frequent alteration in human cancers. Here we present high …
genomic regions that undergo frequent alteration in human cancers. Here we present high …
[HTML][HTML] Mutational landscape and significance across 12 major cancer types
Abstract The Cancer Genome Atlas (TCGA) has used the latest sequencing and analysis
methods to identify somatic variants across thousands of tumours. Here we present data and …
methods to identify somatic variants across thousands of tumours. Here we present data and …
Discovery and saturation analysis of cancer genes across 21 tumour types
Although a few cancer genes are mutated in a high proportion of tumours of a given type (>
20%), most are mutated at intermediate frequencies (2–20%). To explore the feasibility of …
20%), most are mutated at intermediate frequencies (2–20%). To explore the feasibility of …
Proteogenomic characterization of human colon and rectal cancer
Extensive genomic characterization of human cancers presents the problem of inference
from genomic abnormalities to cancer phenotypes. To address this problem, we analysed …
from genomic abnormalities to cancer phenotypes. To address this problem, we analysed …
The mutation spectrum revealed by paired genome sequences from a lung cancer patient
Lung cancer is the leading cause of cancer-related mortality worldwide, with non-small-cell
lung carcinomas in smokers being the predominant form of the disease,. Although previous …
lung carcinomas in smokers being the predominant form of the disease,. Although previous …