[HTML][HTML] Genomic basis for RNA alterations in cancer

PCAWG Transcriptome Core Group Calabrese Claudia … - Nature, 2020 - nature.com
Transcript alterations often result from somatic changes in cancer genomes. Various forms of
RNA alterations have been described in cancer, including overexpression, altered splicing …

[HTML][HTML] The repertoire of mutational signatures in human cancer

LB Alexandrov, J Kim, NJ Haradhvala, MN Huang… - Nature, 2020 - nature.com
Somatic mutations in cancer genomes are caused by multiple mutational processes, each of
which generates a characteristic mutational signature. Here, as part of the Pan-Cancer …

[HTML][HTML] Signatures of mutation and selection in the cancer genome

GR Bignell, CD Greenman, H Davies, AP Butler… - Nature, 2010 - nature.com
The cancer genome is moulded by the dual processes of somatic mutation and selection.
Homozygous deletions in cancer genomes occur over recessive cancer genes, where they …

Cancer and genomics

PA Futreal, A Kasprzyk, E Birney, JC Mullikin… - Nature, 2001 - nature.com
Identification of the genes that cause oncogenesis is a central aim of cancer research. We
searched the proteins predicted from the draft human genome sequence for paralogues of …

[HTML][HTML] Patterns of somatic structural variation in human cancer genomes

Y Li, ND Roberts, JA Wala, O Shapira, SE Schumacher… - Nature, 2020 - nature.com
A key mutational process in cancer is structural variation, in which rearrangements delete,
amplify or reorder genomic segments that range in size from kilobases to whole …

The landscape of somatic copy-number alteration across human cancers

R Beroukhim, CH Mermel, D Porter, G Wei… - Nature, 2010 - nature.com
A powerful way to discover key genes with causal roles in oncogenesis is to identify
genomic regions that undergo frequent alteration in human cancers. Here we present high …

[HTML][HTML] Mutational landscape and significance across 12 major cancer types

C Kandoth, MD McLellan, F Vandin, K Ye, B Niu, C Lu… - Nature, 2013 - nature.com
Abstract The Cancer Genome Atlas (TCGA) has used the latest sequencing and analysis
methods to identify somatic variants across thousands of tumours. Here we present data and …

Discovery and saturation analysis of cancer genes across 21 tumour types

MS Lawrence, P Stojanov, CH Mermel, JT Robinson… - Nature, 2014 - nature.com
Although a few cancer genes are mutated in a high proportion of tumours of a given type (>
20%), most are mutated at intermediate frequencies (2–20%). To explore the feasibility of …

Proteogenomic characterization of human colon and rectal cancer

B Zhang, J Wang, X Wang, J Zhu, Q Liu, Z Shi… - Nature, 2014 - nature.com
Extensive genomic characterization of human cancers presents the problem of inference
from genomic abnormalities to cancer phenotypes. To address this problem, we analysed …

The mutation spectrum revealed by paired genome sequences from a lung cancer patient

W Lee, Z Jiang, J Liu, PM Haverty, Y Guan, J Stinson… - Nature, 2010 - nature.com
Lung cancer is the leading cause of cancer-related mortality worldwide, with non-small-cell
lung carcinomas in smokers being the predominant form of the disease,. Although previous …