The first rule of plant transposable element silencing: location, location, location
MJ Sigman, RK Slotkin - The Plant Cell, 2016 - academic.oup.com
Transposable elements (TEs) are mobile units of DNA that comprise large portions of plant
genomes. Besides creating mutations via transposition and contributing to genome size, TEs …
genomes. Besides creating mutations via transposition and contributing to genome size, TEs …
Controlled activation of retrotransposition for plant breeding
J Paszkowski - Current Opinion in Biotechnology, 2015 - Elsevier
Highlights•Genomes of crop plants are peppered with retrotransposons.•Retrotransposons
can be selectively mobilized in epigenetic mutants.•Their selective mobilization is also …
can be selectively mobilized in epigenetic mutants.•Their selective mobilization is also …
On the role of transposable elements in the regulation of gene expression and subgenomic interactions in crop genomes
Transposable elements (TEs) represent a major and variable portion of plant genomes, and
recent progress in genetics and genomics has highlighted the importance of different TE …
recent progress in genetics and genomics has highlighted the importance of different TE …
The genomic ecosystem of transposable elements in maize
Transposable elements (TEs) constitute the majority of flowering plant DNA, reflecting their
tremendous success in subverting, avoiding, and surviving the defenses of their host …
tremendous success in subverting, avoiding, and surviving the defenses of their host …
Reconstructing de novo silencing of an active plant retrotransposon
A Marí-Ordóñez, A Marchais, M Etcheverry, A Martin… - Nature …, 2013 - nature.com
Transposable elements (TEs) contribute to genome size, organization and evolution. In
plants, their activity is primarily controlled by transcriptional gene silencing (TGS), usually …
plants, their activity is primarily controlled by transcriptional gene silencing (TGS), usually …
The evolution of transposable elements in natural populations of self-fertilizing Arabidopsis thaliana and its outcrossing relative Arabidopsis lyrata
Abstract Background Transposable Elements (TEs) make up the majority of plant genomes,
and thus understanding TE evolutionary dynamics is key to understanding plant genome …
and thus understanding TE evolutionary dynamics is key to understanding plant genome …
Long-read cDNA sequencing enables a “gene-like” transcript annotation of transposable elements
K Panda, RK Slotkin - Plant Cell, 2020 - academic.oup.com
Transcript-based annotations of genes facilitate both genome-wide analyses and detailed
single-locus research. In contrast, transposable element (TE) annotations are rudimentary …
single-locus research. In contrast, transposable element (TE) annotations are rudimentary …
Functional genomics: probing plant gene function and expression with transposons
RA Martienssen - Proceedings of the National Academy of …, 1998 - National Acad Sciences
Transposable elements provide a convenient and flexible means to disrupt plant genes, so
allowing their function to be assessed. By engineering transposons to carry reporter genes …
allowing their function to be assessed. By engineering transposons to carry reporter genes …
Silencing of active transposable elements in plants
Highlights•Multiple mechanisms exist to repress the mutagenic potential of transposable
element (TE) activity.•Transcriptionally active TEs trigger normally latent pathways including …
element (TE) activity.•Transcriptionally active TEs trigger normally latent pathways including …
Transposable elements and the plant pan-genomes
M Morgante, E De Paoli, S Radovic - Current opinion in plant biology, 2007 - Elsevier
The comparative sequencing of several grass genomes has revealed that transposable
elements are largely responsible for extensive variation in both intergenic and local genic …
elements are largely responsible for extensive variation in both intergenic and local genic …