The first rule of plant transposable element silencing: location, location, location

MJ Sigman, RK Slotkin - The Plant Cell, 2016 - academic.oup.com
Transposable elements (TEs) are mobile units of DNA that comprise large portions of plant
genomes. Besides creating mutations via transposition and contributing to genome size, TEs …

Controlled activation of retrotransposition for plant breeding

J Paszkowski - Current Opinion in Biotechnology, 2015 - Elsevier
Highlights•Genomes of crop plants are peppered with retrotransposons.•Retrotransposons
can be selectively mobilized in epigenetic mutants.•Their selective mobilization is also …

On the role of transposable elements in the regulation of gene expression and subgenomic interactions in crop genomes

RA Gill, F Scossa, GJ King, AA Golicz… - Critical Reviews in …, 2021 - Taylor & Francis
Transposable elements (TEs) represent a major and variable portion of plant genomes, and
recent progress in genetics and genomics has highlighted the importance of different TE …

The genomic ecosystem of transposable elements in maize

MC Stitzer, SN Anderson, NM Springer… - PLoS …, 2021 - journals.plos.org
Transposable elements (TEs) constitute the majority of flowering plant DNA, reflecting their
tremendous success in subverting, avoiding, and surviving the defenses of their host …

Reconstructing de novo silencing of an active plant retrotransposon

A Marí-Ordóñez, A Marchais, M Etcheverry, A Martin… - Nature …, 2013 - nature.com
Transposable elements (TEs) contribute to genome size, organization and evolution. In
plants, their activity is primarily controlled by transcriptional gene silencing (TGS), usually …

The evolution of transposable elements in natural populations of self-fertilizing Arabidopsis thaliana and its outcrossing relative Arabidopsis lyrata

S Lockton, BS Gaut - BMC Evolutionary Biology, 2010 - Springer
Abstract Background Transposable Elements (TEs) make up the majority of plant genomes,
and thus understanding TE evolutionary dynamics is key to understanding plant genome …

Long-read cDNA sequencing enables a “gene-like” transcript annotation of transposable elements

K Panda, RK Slotkin - Plant Cell, 2020 - academic.oup.com
Transcript-based annotations of genes facilitate both genome-wide analyses and detailed
single-locus research. In contrast, transposable element (TE) annotations are rudimentary …

Functional genomics: probing plant gene function and expression with transposons

RA Martienssen - Proceedings of the National Academy of …, 1998 - National Acad Sciences
Transposable elements provide a convenient and flexible means to disrupt plant genes, so
allowing their function to be assessed. By engineering transposons to carry reporter genes …

Silencing of active transposable elements in plants

D Fultz, SG Choudury, RK Slotkin - Current opinion in plant biology, 2015 - Elsevier
Highlights•Multiple mechanisms exist to repress the mutagenic potential of transposable
element (TE) activity.•Transcriptionally active TEs trigger normally latent pathways including …

Transposable elements and the plant pan-genomes

M Morgante, E De Paoli, S Radovic - Current opinion in plant biology, 2007 - Elsevier
The comparative sequencing of several grass genomes has revealed that transposable
elements are largely responsible for extensive variation in both intergenic and local genic …