[HTML][HTML] Chromatin compaction under mixed salt conditions: opposite effects of sodium and potassium ions on nucleosome array folding

A Allahverdi, Q Chen, N Korolev, L Nordenskiöld - Scientific reports, 2015 - nature.com
It is well known that chromatin structure is highly sensitive to the ionic environment.
However, the combined effects of a physiologically relevant mixed ionic environment of K+ …

[HTML][HTML] Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling

A Sabantsev, RF Levendosky, X Zhuang… - Nature …, 2019 - nature.com
ATP-dependent chromatin remodelling enzymes (remodellers) regulate DNA accessibility in
eukaryotic genomes. Many remodellers reposition (slide) nucleosomes, however, how DNA …

[HTML][HTML] High precision FRET studies reveal reversible transitions in nucleosomes between microseconds and minutes

A Gansen, S Felekyan, R Kühnemuth… - Nature …, 2018 - nature.com
Nucleosomes play a dual role in compacting the genome and regulating the access to DNA.
To unravel the underlying mechanism, we study fluorescently labeled mononucleosomes by …

Why do disordered and structured proteins behave differently in phase separation?

HX Zhou, V Nguemaha, K Mazarakos, S Qin - Trends in biochemical …, 2018 - cell.com
Intracellular membraneless organelles and their myriad cellular functions have garnered
tremendous recent interest. It is becoming well accepted that they form via liquid–liquid …

[HTML][HTML] Macromolecular condensation organizes nucleolar sub-phases to set up a pH gradient

MR King, KM Ruff, AZ Lin, A Pant, M Farag… - Cell, 2024 - cell.com
Nucleoli are multicomponent condensates defined by coexisting sub-phases. We identified
distinct intrinsically disordered regions (IDRs), including acidic (D/E) tracts and K-blocks …

Bi-directional nucleosome sliding by the Chd1 chromatin remodeler integrates intrinsic sequence-dependent and ATP-dependent nucleosome positioning

S Park, GB Brandani, T Ha… - Nucleic acids research, 2023 - academic.oup.com
Chromatin remodelers use a helicase-type ATPase motor to shift DNA around the histone
core. Although not directly reading out the DNA sequence, some chromatin remodelers …

Sequence dependent phase separation of protein-polynucleotide mixtures elucidated using molecular simulations

RM Regy, GL Dignon, W Zheng, YC Kim… - Nucleic acids …, 2020 - academic.oup.com
Ribonucleoprotein (RNP) granules are membraneless organelles (MLOs), which majorly
consist of RNA and RNA-binding proteins and are formed via liquid–liquid phase separation …

Dynamics of nucleosomes revealed by time-lapse atomic force microscopy

LS Shlyakhtenko, AY Lushnikov, YL Lyubchenko - Biochemistry, 2009 - ACS Publications
The dynamics of chromatin provides the access to DNA within nucleosomes, and therefore,
this process is critically involved in the regulation of chromatin function. However, our …

Biophysics of chromatin dynamics

B Fierz, MG Poirier - Annual review of biophysics, 2019 - annualreviews.org
Nucleosomes and chromatin control eukaryotic genome accessibility and thereby regulate
DNA processes, including transcription, replication, and repair. Conformational dynamics …

[HTML][HTML] Asymmetrically modified nucleosomes

P Voigt, G LeRoy, WJ Drury, BM Zee, J Son, DB Beck… - Cell, 2012 - cell.com
Mononucleosomes, the basic building blocks of chromatin, contain two copies of each core
histone. The associated posttranslational modifications regulate essential chromatin …