[HTML][HTML] Chromatin compaction under mixed salt conditions: opposite effects of sodium and potassium ions on nucleosome array folding
It is well known that chromatin structure is highly sensitive to the ionic environment.
However, the combined effects of a physiologically relevant mixed ionic environment of K+ …
However, the combined effects of a physiologically relevant mixed ionic environment of K+ …
[HTML][HTML] Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling
A Sabantsev, RF Levendosky, X Zhuang… - Nature …, 2019 - nature.com
ATP-dependent chromatin remodelling enzymes (remodellers) regulate DNA accessibility in
eukaryotic genomes. Many remodellers reposition (slide) nucleosomes, however, how DNA …
eukaryotic genomes. Many remodellers reposition (slide) nucleosomes, however, how DNA …
[HTML][HTML] High precision FRET studies reveal reversible transitions in nucleosomes between microseconds and minutes
A Gansen, S Felekyan, R Kühnemuth… - Nature …, 2018 - nature.com
Nucleosomes play a dual role in compacting the genome and regulating the access to DNA.
To unravel the underlying mechanism, we study fluorescently labeled mononucleosomes by …
To unravel the underlying mechanism, we study fluorescently labeled mononucleosomes by …
Why do disordered and structured proteins behave differently in phase separation?
Intracellular membraneless organelles and their myriad cellular functions have garnered
tremendous recent interest. It is becoming well accepted that they form via liquid–liquid …
tremendous recent interest. It is becoming well accepted that they form via liquid–liquid …
[HTML][HTML] Macromolecular condensation organizes nucleolar sub-phases to set up a pH gradient
MR King, KM Ruff, AZ Lin, A Pant, M Farag… - Cell, 2024 - cell.com
Nucleoli are multicomponent condensates defined by coexisting sub-phases. We identified
distinct intrinsically disordered regions (IDRs), including acidic (D/E) tracts and K-blocks …
distinct intrinsically disordered regions (IDRs), including acidic (D/E) tracts and K-blocks …
Bi-directional nucleosome sliding by the Chd1 chromatin remodeler integrates intrinsic sequence-dependent and ATP-dependent nucleosome positioning
Chromatin remodelers use a helicase-type ATPase motor to shift DNA around the histone
core. Although not directly reading out the DNA sequence, some chromatin remodelers …
core. Although not directly reading out the DNA sequence, some chromatin remodelers …
Sequence dependent phase separation of protein-polynucleotide mixtures elucidated using molecular simulations
Ribonucleoprotein (RNP) granules are membraneless organelles (MLOs), which majorly
consist of RNA and RNA-binding proteins and are formed via liquid–liquid phase separation …
consist of RNA and RNA-binding proteins and are formed via liquid–liquid phase separation …
Dynamics of nucleosomes revealed by time-lapse atomic force microscopy
LS Shlyakhtenko, AY Lushnikov, YL Lyubchenko - Biochemistry, 2009 - ACS Publications
The dynamics of chromatin provides the access to DNA within nucleosomes, and therefore,
this process is critically involved in the regulation of chromatin function. However, our …
this process is critically involved in the regulation of chromatin function. However, our …
Biophysics of chromatin dynamics
B Fierz, MG Poirier - Annual review of biophysics, 2019 - annualreviews.org
Nucleosomes and chromatin control eukaryotic genome accessibility and thereby regulate
DNA processes, including transcription, replication, and repair. Conformational dynamics …
DNA processes, including transcription, replication, and repair. Conformational dynamics …
[HTML][HTML] Asymmetrically modified nucleosomes
Mononucleosomes, the basic building blocks of chromatin, contain two copies of each core
histone. The associated posttranslational modifications regulate essential chromatin …
histone. The associated posttranslational modifications regulate essential chromatin …