PROMINENT: AN INTERPRETABLE DEEP LEARNING METHOD TO PREDICT PHENOTYPES USING DNA METHYLATION
L Zhang - 2024 - d-scholarship.pitt.edu
DNA methylation (DNAm) is an epigenetic mark that regulates genome function and is
important for normal development in mammals. To understand the complex interplay …
important for normal development in mammals. To understand the complex interplay …
MLACNN: an attention mechanism-based CNN architecture for predicting genome-wide DNA methylation
JG Bai, H Yang, CD Wu - Theory in Biosciences, 2023 - Springer
Methylation is an important epigenetic regulation of methylation genes that plays a crucial
role in regulating biological processes. While traditional methods for detecting methylation in …
role in regulating biological processes. While traditional methods for detecting methylation in …
DeepMethyGene: a deep-learning model to predict gene expression using DNA methylations
W Li, S Wang, T Huang - 2024 - researchsquare.com
Gene expression influences various physiological functions and plays a critical role in
disease progression. One of the key mechanisms governing gene expression is DNA …
disease progression. One of the key mechanisms governing gene expression is DNA …
Predicting locus-specific DNA methylation based on deep neural network
B Ma, J Dong, S Zhang, H Yan, J Pan, C Li… - Bio-Inspired Computing …, 2021 - Springer
The next generation sequencing technologies have enabled DNA methylation levels to be
assayed at single-base resolution in the whole genome, but this method is relatively …
assayed at single-base resolution in the whole genome, but this method is relatively …
MethylNet: an automated and modular deep learning approach for DNA methylation analysis
Background DNA methylation (DNAm) is an epigenetic regulator of gene expression
programs that can be altered by environmental exposures, aging, and in pathogenesis …
programs that can be altered by environmental exposures, aging, and in pathogenesis …
iDNA-OpenPrompt: OpenPrompt learning model for identifying DNA methylation
X Yu, J Ren, H Long, R Zeng, G Zhang, A Bilal… - Frontiers in …, 2024 - frontiersin.org
Introduction: DNA methylation is a critical epigenetic modification involving the addition of a
methyl group to the DNA molecule, playing a key role in regulating gene expression without …
methyl group to the DNA molecule, playing a key role in regulating gene expression without …
iDNA-ABT: advanced deep learning model for detecting DNA methylation with adaptive features and transductive information maximization
Motivation DNA methylation plays an important role in epigenetic modification, the
occurrence, and the development of diseases. Therefore, identification of DNA methylation …
occurrence, and the development of diseases. Therefore, identification of DNA methylation …
NCAE: data-driven representations using a deep network-coherent DNA methylation autoencoder identify robust disease and risk factor signatures
D Martínez-Enguita, SK Dwivedi… - Briefings in …, 2023 - academic.oup.com
Precision medicine relies on the identification of robust disease and risk factor signatures
from omics data. However, current knowledge-driven approaches may overlook novel or …
from omics data. However, current knowledge-driven approaches may overlook novel or …
Predicting the impact of non-coding variants on DNA methylation
H Zeng, DK Gifford - Nucleic acids research, 2017 - academic.oup.com
DNA methylation plays a crucial role in the establishment of tissue-specific gene expression
and the regulation of key biological processes. However, our present inability to predict the …
and the regulation of key biological processes. However, our present inability to predict the …
[PDF][PDF] Discovering DNA motifs and genomic variants associated with DNA methylation
H Zeng, DK Gifford - bioRxiv, 2016 - pdfs.semanticscholar.org
DNA methylation plays a crucial role in establishing tissue-specific gene expression.
However, our incomplete understanding of the cis elements that regulate DNA methylation …
However, our incomplete understanding of the cis elements that regulate DNA methylation …