Genome-wide significance testing of variation from single case exomes
Standard techniques from genetic epidemiology are ill-suited to formally assess the
significance of variants identified from a single case. We developed a statistical inference …
significance of variants identified from a single case. We developed a statistical inference …
[HTML][HTML] Calculating the statistical significance of rare variants causal for Mendelian and complex disorders
AR Rao, SF Nelson - BMC medical genomics, 2018 - Springer
Background With the expanding use of next-gen sequencing (NGS) to diagnose the
thousands of rare Mendelian genetic diseases, it is critical to be able to interpret individual …
thousands of rare Mendelian genetic diseases, it is critical to be able to interpret individual …
Inferring compound heterozygosity from large-scale exome sequencing data
Recessive diseases arise when both copies of a gene are impacted by a damaging genetic
variant. When a patient carries two potentially causal variants in a gene, accurate diagnosis …
variant. When a patient carries two potentially causal variants in a gene, accurate diagnosis …
A genome-wide case-only test for the detection of digenic inheritance in human exomes
G Kerner, M Bouaziz, A Cobat, B Bigio… - Proceedings of the …, 2020 - National Acad Sciences
Whole-exome sequencing (WES) has facilitated the discovery of genetic lesions underlying
monogenic disorders. Incomplete penetrance and variable expressivity suggest a …
monogenic disorders. Incomplete penetrance and variable expressivity suggest a …
[HTML][HTML] Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease
A Sifrim, JKJ Van Houdt, LC Tranchevent… - Genome medicine, 2012 - Springer
The increasing size and complexity of exome/genome sequencing data requires new tools
for clinical geneticists to discover disease-causing variants. Bottlenecks in identifying the …
for clinical geneticists to discover disease-causing variants. Bottlenecks in identifying the …
New concerns raised over value of genome-wide disease studies.
E Callaway - Nature, 2017 - go.gale.com
Large analyses dredge up'peripheral'genetic associations that offer little biological insight,
researchers say. Full Text: Author (s): Ewen Callaway Author Affiliations: Genome-wide …
researchers say. Full Text: Author (s): Ewen Callaway Author Affiliations: Genome-wide …
[HTML][HTML] Analysis of protein-coding genetic variation in 60,706 humans
Large-scale reference data sets of human genetic variation are critical for the medical and
functional interpretation of DNA sequence changes. Here we describe the aggregation and …
functional interpretation of DNA sequence changes. Here we describe the aggregation and …
Imputation-based assessment of next generation rare exome variant arrays
A striking finding from recent large-scale sequencing efforts is that the vast majority of
variants in the human genome are rare and found within single populations or lineages …
variants in the human genome are rare and found within single populations or lineages …
A simple and accurate method to determine genomewide significance for association tests in sequencing studies
DY Lin - Genetic epidemiology, 2019 - Wiley Online Library
Whole‐exome sequencing (WES) and whole‐genome sequencing (WGS) studies are
underway to investigate the impact of genetic variants on complex diseases and traits. It is …
underway to investigate the impact of genetic variants on complex diseases and traits. It is …
[HTML][HTML] Reducing the exome search space for mendelian diseases using genetic linkage analysis of exome genotypes
Many exome sequencing studies of Mendelian disorders fail to optimally exploit family
information. Classical genetic linkage analysis is an effective method for eliminating a large …
information. Classical genetic linkage analysis is an effective method for eliminating a large …