Genome-wide significance testing of variation from single case exomes

AB Wilfert, KR Chao, M Kaushal, S Jain, S Zöllner… - Nature …, 2016 - nature.com
Standard techniques from genetic epidemiology are ill-suited to formally assess the
significance of variants identified from a single case. We developed a statistical inference …

[HTML][HTML] Calculating the statistical significance of rare variants causal for Mendelian and complex disorders

AR Rao, SF Nelson - BMC medical genomics, 2018 - Springer
Background With the expanding use of next-gen sequencing (NGS) to diagnose the
thousands of rare Mendelian genetic diseases, it is critical to be able to interpret individual …

Inferring compound heterozygosity from large-scale exome sequencing data

MH Guo, LC Francioli, SL Stenton, JK Goodrich… - Nature …, 2024 - nature.com
Recessive diseases arise when both copies of a gene are impacted by a damaging genetic
variant. When a patient carries two potentially causal variants in a gene, accurate diagnosis …

A genome-wide case-only test for the detection of digenic inheritance in human exomes

G Kerner, M Bouaziz, A Cobat, B Bigio… - Proceedings of the …, 2020 - National Acad Sciences
Whole-exome sequencing (WES) has facilitated the discovery of genetic lesions underlying
monogenic disorders. Incomplete penetrance and variable expressivity suggest a …

[HTML][HTML] Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease

A Sifrim, JKJ Van Houdt, LC Tranchevent… - Genome medicine, 2012 - Springer
The increasing size and complexity of exome/genome sequencing data requires new tools
for clinical geneticists to discover disease-causing variants. Bottlenecks in identifying the …

New concerns raised over value of genome-wide disease studies.

E Callaway - Nature, 2017 - go.gale.com
Large analyses dredge up'peripheral'genetic associations that offer little biological insight,
researchers say. Full Text: Author (s): Ewen Callaway Author Affiliations: Genome-wide …

[HTML][HTML] Analysis of protein-coding genetic variation in 60,706 humans

M Lek, KJ Karczewski, EV Minikel, KE Samocha… - Nature, 2016 - nature.com
Large-scale reference data sets of human genetic variation are critical for the medical and
functional interpretation of DNA sequence changes. Here we describe the aggregation and …

Imputation-based assessment of next generation rare exome variant arrays

AR Martin, G Tse, CD Bustamante, EE Kenny - Biocomputing 2014, 2014 - World Scientific
A striking finding from recent large-scale sequencing efforts is that the vast majority of
variants in the human genome are rare and found within single populations or lineages …

A simple and accurate method to determine genomewide significance for association tests in sequencing studies

DY Lin - Genetic epidemiology, 2019 - Wiley Online Library
Whole‐exome sequencing (WES) and whole‐genome sequencing (WGS) studies are
underway to investigate the impact of genetic variants on complex diseases and traits. It is …

[HTML][HTML] Reducing the exome search space for mendelian diseases using genetic linkage analysis of exome genotypes

KR Smith, CJ Bromhead, MS Hildebrand, AE Shearer… - Genome biology, 2011 - Springer
Many exome sequencing studies of Mendelian disorders fail to optimally exploit family
information. Classical genetic linkage analysis is an effective method for eliminating a large …