High-quality genome assembly and resequencing of modern cotton cultivars provide resources for crop improvement
Z Ma, Y Zhang, L Wu, G Zhang, Z Sun, Z Li, Y Jiang… - Nature Genetics, 2021 - nature.com
Cotton produces natural fiber for the textile industry. The genetic effects of genomic structural
variations underlying agronomic traits remain unclear. Here, we generate two high-quality …
variations underlying agronomic traits remain unclear. Here, we generate two high-quality …
The Gossypium longicalyx Genome as a Resource for Cotton Breeding and Evolution
Cotton is an important crop that has made significant gains in production over the last
century. Emerging pests such as the reniform nematode have threatened cotton production …
century. Emerging pests such as the reniform nematode have threatened cotton production …
Gossypium genomics: trends, scope, and utilization for cotton improvement
Cotton (Gossypium spp.) is the most important natural fiber crop worldwide. The diversity of
Gossypium species also provides an ideal model for investigating evolution and …
Gossypium species also provides an ideal model for investigating evolution and …
Widespread incomplete lineage sorting and introgression shaped adaptive radiation in the Gossypium genus
Y Xu, Y Wei, Z Zhou, X Cai, SA Boden, MJ Umer… - Plant …, 2024 - cell.com
Cotton (Gossypium) stands as a crucial economic crop, serving as the primary source of
natural fiber for the textile sector. However, the evolutionary mechanisms driving speciation …
natural fiber for the textile sector. However, the evolutionary mechanisms driving speciation …
Persistence of subgenomes in paleopolyploid cotton after 60 my of evolution
The importance of whole-genome multiplication (WGM) in plant evolution has long been
recognized. In flowering plants, WGM is both ubiquitous and in many lineages cyclical, each …
recognized. In flowering plants, WGM is both ubiquitous and in many lineages cyclical, each …
PolyCat: a resource for genome categorization of sequencing reads from allopolyploid organisms
JT Page, AR Gingle, JA Udall - G3: Genes, genomes, genetics, 2013 - academic.oup.com
Read mapping is a fundamental part of next-generation genomic research but is
complicated by genome duplication in many plants. Categorizing DNA sequence reads into …
complicated by genome duplication in many plants. Categorizing DNA sequence reads into …
Genome-wide recombination rate variation in a recombination map of cotton
C Shen, X Li, R Zhang, Z Lin - PLoS One, 2017 - journals.plos.org
Recombination is crucial for genetic evolution, which not only provides new allele
combinations but also influences the biological evolution and efficacy of natural selection …
combinations but also influences the biological evolution and efficacy of natural selection …
Chromatin loops associated with active genes and heterochromatin shape rice genome architecture for transcriptional regulation
Insight into high-resolution three-dimensional genome organization and its effect on
transcription remains largely elusive in plants. Here, using a long-read ChIA-PET approach …
transcription remains largely elusive in plants. Here, using a long-read ChIA-PET approach …
Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium
The DNA content of eukaryotic nuclei (C-value) varies∼ 200,000-fold, but there is only a∼
20-fold variation in the number of protein-coding genes. Hence, most C-value variation is …
20-fold variation in the number of protein-coding genes. Hence, most C-value variation is …
MULTILOCUS INTERACTIONS RESTRICT GENE INTROGRESSION IN INTERSPECIFIC POPULATIONS OF POLYPLOID GOSSYPIUM (COTTON)
Abstract.—Experimental advanced‐generation backcross populations contain individuals
with genomic compositions similar to those resulting from interspecific hybridization in …
with genomic compositions similar to those resulting from interspecific hybridization in …