Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species
Chloroplast sequences are widely used for phylogenetic analysis due to their high degree of
conservation in plants. Whole chloroplast genomes can now be readily obtained for plant …
conservation in plants. Whole chloroplast genomes can now be readily obtained for plant …
CGAP: a new comprehensive platform for the comparative analysis of chloroplast genomes
J Cheng, X Zeng, G Ren, Z Liu - BMC bioinformatics, 2013 - Springer
Background Chloroplast is an essential organelle in plants which contains independent
genome. Chloroplast genomes have been widely used for plant phylogenetic inference …
genome. Chloroplast genomes have been widely used for plant phylogenetic inference …
The complete chloroplast genome of ornamental coffee tree, Coffea arabica L. (Rubiaceae)
J Park, Y Kim, H Xi, KI Heo - Mitochondrial DNA Part B, 2019 - Taylor & Francis
Coffea arabica L. taking 70% of world coffee production is also used as an ornamental
species. One imported coffee tree from Indonesia near to thirty years ago of which leaf is …
species. One imported coffee tree from Indonesia near to thirty years ago of which leaf is …
Assembly, annotation and analysis of chloroplast genomes
X Zhong - 2020 - research-repository.uwa.edu.au
Chloroplast genome data is useful for phylogenetic analyses, for species identification and
for tracing evolutionary adaptations. Current sequencing technology enables us to obtain …
for tracing evolutionary adaptations. Current sequencing technology enables us to obtain …
Comparison of different annotation tools for characterization of the complete chloroplast genome of Corylus avellana cv Tombul
K Kahraman, SJ Lucas - Bmc Genomics, 2019 - Springer
Background Several bioinformatics tools have been designed for assembly and annotation
of chloroplast (cp) genomes, making it difficult to decide which is most useful and applicable …
of chloroplast (cp) genomes, making it difficult to decide which is most useful and applicable …
A systematic comparison of chloroplast genome assembly tools
JA Freudenthal, S Pfaff, N Terhoeven, A Korte… - Genome Biology, 2020 - Springer
Background Chloroplasts are intracellular organelles that enable plants to conduct
photosynthesis. They arose through the symbiotic integration of a prokaryotic cell into an …
photosynthesis. They arose through the symbiotic integration of a prokaryotic cell into an …
Chloroplast genome phylogenetics: why we need independent approaches to plant molecular evolution
The traditional approach to plant molecular phylogenetics involves amplifying, sequencing
and analyzing one or a few genes from many species and is conducive to broad taxon …
and analyzing one or a few genes from many species and is conducive to broad taxon …
CPGView: A package for visualizing detailed chloroplast genome structures
S Liu, Y Ni, J Li, X Zhang, H Yang… - Molecular ecology …, 2023 - Wiley Online Library
Chloroplast genomes have been widely used in studying plant phylogeny and evolution.
Several chloroplast genome visualization tools have been developed to display the …
Several chloroplast genome visualization tools have been developed to display the …
An update on chloroplast genomes
Plant cells possess two more genomes besides the central nuclear genome: the
mitochondrial genome and the chloroplast genome (or plastome). Compared to the gigantic …
mitochondrial genome and the chloroplast genome (or plastome). Compared to the gigantic …
Development of a reference standard library of chloroplast genome sequences, GenomeTrakrCP
N Zhang, P Ramachandran, J Wen, JA Duke… - Planta …, 2017 - thieme-connect.com
Precise, species-level identification of plants in foods and dietary supplements is difficult.
While the use of DNA barcoding regions (short regions of DNA with diagnostic utility) has …
While the use of DNA barcoding regions (short regions of DNA with diagnostic utility) has …