Background A pangenome aims to capture the complete genetic diversity within a species
and reduce bias in genetic analysis inherent in using a single reference genome. However …

A pan-genome is the union of the gene sets of all the individuals of a clade or a species and
it provides a new dimension of genome complexity with the presence/absence variations …

The concept of pan-genome, which is the collection of all genomes from a population, has
shown a great potential in genomics study, especially for crop sciences. The rice pan …

A genome-wide association study (GWAS) can be a powerful tool for the identification of
genes associated with agronomic traits in crop species, but it is often hindered by population …

Pan-genomes from large natural populations can capture genetic diversity and reveal
genomic complexity. Using de novo long-read assembly, we generated a graph-based …

Rice is a model system for crop genomics studies. Much of the early work on rice genomics
focused on analyzing genome-wide genetic variation to further understand rice gene …

Rice, which has a modest genome size, is a wonderful model crop that has been
comprehensively studied in functional genomics. With vast germplasm resources and …

Structural variations (SVs) and gene copy number variations (gCNVs) have contributed to
crop evolution, domestication, and improvement. Here, we assembled 31 high-quality …

Genome-wide association studies (GWAS), genetic surveys of the whole genome to detect
variants associated with a trait in natural populations, are a powerful approach for dissecting …

Background The high-quality sequence information and rich bioinformatics tools available
for rice have contributed to remarkable advances in functional genomics. To facilitate the …