Accounting for calibration uncertainty: Bayesian molecular dating as a “doubly intractable” problem
S Guindon - Systematic Biology, 2018 - academic.oup.com
This study introduces a new Bayesian technique for molecular dating that explicitly
accommodates for uncertainty in the phylogenetic position of calibrated nodes derived from …
accommodates for uncertainty in the phylogenetic position of calibrated nodes derived from …
A simulation-based evaluation of tip-dating under the fossilized birth–death process
Bayesian molecular dating is widely used to study evolutionary timescales. This procedure
usually involves phylogenetic analysis of nucleotide sequence data, with fossil-based …
usually involves phylogenetic analysis of nucleotide sequence data, with fossil-based …
Impacts of taxon-sampling schemes on Bayesian tip dating under the fossilized birth-death process
Evolutionary timescales can be inferred by molecular-clock analyses of genetic data and
fossil evidence. Bayesian phylogenetic methods such as tip dating provide a powerful …
fossil evidence. Bayesian phylogenetic methods such as tip dating provide a powerful …
Bayesian molecular dating: opening up the black box
Molecular dating analyses allow evolutionary timescales to be estimated from genetic data,
offering an unprecedented capacity for investigating the evolutionary past of all species …
offering an unprecedented capacity for investigating the evolutionary past of all species …
[HTML][HTML] Comparison of different strategies for using fossil calibrations to generate the time prior in Bayesian molecular clock dating
Fossil calibrations are the utmost source of information for resolving the distances between
molecular sequences into estimates of absolute times and absolute rates in molecular clock …
molecular sequences into estimates of absolute times and absolute rates in molecular clock …
Data-driven speciation tree prior for better species divergence times in calibration-poor molecular phylogenies
Motivation Precise time calibrations needed to estimate ages of species divergence are not
always available due to fossil records' incompleteness. Consequently, clock calibrations …
always available due to fossil records' incompleteness. Consequently, clock calibrations …
Impacts of taxon-sampling schemes on Bayesian molecular dating under the unresolved fossilized birth-death process
Evolutionary timescales can be estimated using a combination of genetic data and fossil
evidence based on the molecular clock. Bayesian phylogenetic methods such as tip dating …
evidence based on the molecular clock. Bayesian phylogenetic methods such as tip dating …
Assignment of calibration information to deeper phylogenetic nodes is more effective in obtaining precise and accurate divergence time estimates
B Mello, CG Schrago - Evolutionary Bioinformatics, 2014 - journals.sagepub.com
Divergence time estimation has become an essential tool for understanding
macroevolutionary events. Molecular dating aims to obtain reliable inferences, which, within …
macroevolutionary events. Molecular dating aims to obtain reliable inferences, which, within …
Bayesian phylogenomic dating
S Álvarez-Carretero, M dos Reis - The Molecular Evolutionary Clock …, 2020 - Springer
The development of divergence-time estimation methods has been an active area of
research since the early 1960s, when the molecular clock was first postulated by …
research since the early 1960s, when the molecular clock was first postulated by …
The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times
J Inoue, PCJ Donoghue, Z Yang - Systematic biology, 2010 - academic.oup.com
Bayesian inference provides a powerful framework for integrating different sources of
information (in particular, molecules and fossils) to derive estimates of species divergence …
information (in particular, molecules and fossils) to derive estimates of species divergence …