α-Smooth muscle actin expression and desmoplastic stromal reaction in pancreatic cancer: results from the CONKO-001 study

M Sinn, C Denkert, JK Striefler, U Pelzer… - British journal of …, 2014 - nature.com
Background: Previous investigations in pancreatic cancer suggest a prognostic role for α-
smooth muscle actin (α-SMA) expression and stromal density in the peritumoural stroma …

Building a tumor atlas: integrating single-cell RNA-Seq data with spatial transcriptomics in pancreatic ductal adenocarcinoma

R Moncada, M Chiodin, JC Devlin, M Baron, CH Hajdu… - BioRxiv, 2018 - biorxiv.org
To understand the architecture of a tissue it is necessary to know both the cell populations
and their physical relationships to one another. Single-cell RNA-Seq (scRNA-Seq) has …

Spatiotemporal heterogeneity and clinical challenge of pancreatic neuroendocrine tumors

X Lou, Y Qin, X Xu, X Yu, S Ji - … et Biophysica Acta (BBA)-Reviews on …, 2022 - Elsevier
During the course of pancreatic neuroendocrine tumors (NETs), they generally become
more heterogeneous with individual cells exhibiting distinct molecular fingerprints. This …

Multimodal spatial transcriptomics uncover distinct tumor microenvironment states and cell-cell communication networks in molecular pancreatic cancer subtypes

S Baerthel, C Falcomatà, V Goelling, D Lucarelli… - Cancer Research, 2024 - AACR
The tumor microenvironment (TME) presents a complex ecosystem comprising a diversity of
immune and stromal cell populations that influence tumor progression, drug delivery and …

Comprehensive characterisation of compartment-specific long non-coding RNAs associated with pancreatic ductal adenocarcinoma

L Arnes, Z Liu, J Wang, C Maurer, I Sagalovskiy… - Gut, 2019 - gut.bmj.com
Objective Pancreatic ductal adenocarcinoma (PDA) is a highly metastatic disease with
limited therapeutic options. Genome and transcriptome analyses have identified signalling …

Integrating single-cell RNA-Seq with spatial transcriptomics in pancreatic ductal adenocarcinoma using multimodal intersection analysis

R Moncada, F Wagner, M Chiodin, JC Devlin, M Baron… - 2018 - europepmc.org
To understand tissue architecture, it is necessary to understand both which cell types are
present and the physical relationships among them. Single-cell RNA-Seq (scRNA-Seq) has …

Abstract IA16: Reconstructing compartment− specific regulatory programs in pancreatic cancer

HC Maurer, J He, MJ Alvarez, F Giorgi, S Holmstrom… - Cancer Research, 2016 - AACR
Pancreatic cancer is characterized by an expansive, desmoplastic stroma that responds to
neoplastic signals from the malignant epithelium while also instigating a cacophony of …

[PDF][PDF] Spatial transcriptomics of FFPE pancreatic intraepithelial neoplasias reveals cellular and molecular alterations of progression to pancreatic ductal carcinoma

AT Bell, JT Mitchell, AL Kiemen, K Fujikura, H Fedor… - Biorxiv, 2022 - scholar.archive.org
Spatial transcriptomics (ST) is a powerful approach for cancers molecular and cellular
characterization. Pancreatic intraepithelial neoplasia (PanIN) is a pancreatic ductal …

Spatial profiling of neuro-immune interactions in gastroenteropancreatic NETs

S Duan, TW Sawyer, BL Witten, H Song, T Else… - bioRxiv, 2023 - biorxiv.org
Gastroenteropancreatic neuroendocrine tumors (GEP-NETs) are heterogeneous
malignancies that arise from complex cellular interactions within the tissue …

Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas

R Moncada, D Barkley, F Wagner, M Chiodin… - Nature …, 2020 - nature.com
Single-cell RNA sequencing (scRNA-seq) enables the systematic identification of cell
populations in a tissue, but characterizing their spatial organization remains challenging. We …