Ancestors of modern plant crops

J Salse - Current Opinion in Plant Biology, 2016 - Elsevier
Highlights•Angiosperms derive from MRCAs structured in 7 protochromosomes with∼ 10
000 protogenes.•Modern plant genomes evolved from MRCAs through recurrent …

In silico archeogenomics unveils modern plant genome organisation, regulation and evolution

J Salse - Current opinion in plant biology, 2012 - Elsevier
Increasing access to plant genome sequences as well as high resolution gene-based
genetic maps have recently offered the opportunity to compare modern genomes and model …

Reconstructing the genome of the most recent common ancestor of flowering plants

F Murat, A Armero, C Pont, C Klopp, J Salse - Nature genetics, 2017 - nature.com
We describe here the reconstruction of the genome of the most recent common ancestor
(MRCA) of modern monocots and eudicots, accounting for 95% of extant angiosperms, with …

Palaeogenomics of plants: synteny-based modelling of extinct ancestors

M Abrouk, F Murat, C Pont, J Messing, S Jackson… - Trends in plant …, 2010 - cell.com
In the past ten years, international initiatives have led to the development of large sets of
genomic resources that allow comparative genomic studies between plant genomes at a …

Deciphering the evolutionary interplay between subgenomes following polyploidy: a paleogenomics approach in grasses

J Salse - American Journal of Botany, 2016 - Wiley Online Library
How did plant species emerge from their most recent common ancestors (MRCAs) 250
million years ago? Modern plant genomes help to address such key questions in unveiling …

Journey through the past: 150 million years of plant genome evolution

S Proost, P Pattyn, T Gerats, Y Van de Peer - The Plant Journal, 2011 - Wiley Online Library
The genome sequence of the plant model organism Arabidopsis thaliana was presented in
December of the year 2000. Since then, the 125 Mb sequence has revealed many of its …

Paleogenomics: reconstruction of plant evolutionary trajectories from modern and ancient DNA

C Pont, S Wagner, A Kremer, L Orlando, C Plomion… - Genome Biology, 2019 - Springer
How contemporary plant genomes originated and evolved is a fascinating question. One
approach uses reference genomes from extant species to reconstruct the sequence and …

Genomic approaches for studying crop evolution

M Schreiber, N Stein, M Mascher - Genome biology, 2018 - Springer
Understanding how crop plants evolved from their wild relatives and spread around the
world can inform about the origins of agriculture. Here, we review how the rapid …

GenomicusPlants: a web resource to study genome evolution in flowering plants

A Louis, F Murat, J Salse… - Plant and Cell …, 2015 - academic.oup.com
Comparative genomics combined with phylogenetic reconstructions are powerful
approaches to study the evolution of genes and genomes. However, the current rapid …

Tapping the promise of genomics in species with complex, nonmodel genomes

CN Hirsch, C Robin Buell - Annual review of plant biology, 2013 - annualreviews.org
Genomics is enabling a renaissance in all disciplines of plant biology. However, many plant
genomes are complex and remain recalcitrant to current genomic technologies. The …