Use of whole-genome sequencing to predict Mycobacterium tuberculosis drug resistance in Indonesia

L Chaidir, C Ruesen, BE Dutilh, AR Ganiem… - Journal of global …, 2019 - Elsevier
Objectives Whole-genome sequencing (WGS) is rarely used for drug resistance testing of
Mycobacterium tuberculosis in high-endemic settings. Here we present the first study from …

Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study

TM Walker, TA Kohl, SV Omar, J Hedge… - The Lancet infectious …, 2015 - thelancet.com
Background Diagnosing drug-resistance remains an obstacle to the elimination of
tuberculosis. Phenotypic drug-susceptibility testing is slow and expensive, and commercial …

Prediction of drug resistance profile of multidrug-resistant Mycobacterium tuberculosis (MDR-MTB) isolates from newly diagnosed case by whole genome sequencing …

W Sun, X Gui, Z Wu, Y Zhang, L Yan - BMC Infectious Diseases, 2022 - Springer
Objectives Our aim was to assess the ability of the Whole-genome sequencing (WGS) in
predicting drug resistance profile of multidrug-resistant mycobacterium tuberculosis (MDR …

Whole genomic sequencing as a tool for diagnosis of drug and multidrug-resistance tuberculosis in an endemic region in Mexico

CF Madrazo-Moya, I Cancino-Muñoz… - PLoS …, 2019 - journals.plos.org
Background Whole genome sequencing (WGS) has been proposed as a tool for diagnosing
drug resistance in tuberculosis. However, reports of its effectiveness in endemic countries …

Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs

JE Phelan, DM O'sullivan, D Machado, J Ramos… - Genome medicine, 2019 - Springer
Background Mycobacterium tuberculosis resistance to anti-tuberculosis drugs is a major
threat to global public health. Whole genome sequencing (WGS) is rapidly gaining traction …

[HTML][HTML] Whole genome sequencing of Mycobacterium tuberculosis for detection of drug resistance: a systematic review

D Papaventsis, N Casali, I Kontsevaya… - Clinical Microbiology …, 2017 - Elsevier
Objectives We conducted a systematic review to determine the diagnostic accuracy of whole
genome sequencing (WGS) of Mycobacterium tuberculosis for the detection of resistance to …

Genotypic and phenotypic comparison of drug resistance profiles of clinical multidrug-resistant Mycobacterium tuberculosis isolates using whole genome sequencing …

A Vīksna, D Sadovska, I Berge, I Bogdanova… - BMC Infectious …, 2023 - Springer
Background Multidrug-resistant tuberculosis (MDR–TB) remains a major public health
problem in many high tuberculosis (TB) burden countries. Phenotypic drug susceptibility …

Deciphering drug resistance in Mycobacterium tuberculosis using whole-genome sequencing: progress, promise, and challenges

KA Cohen, AL Manson, CA Desjardins, T Abeel… - Genome medicine, 2019 - Springer
Tuberculosis (TB) is a global infectious threat that is intensified by an increasing incidence of
highly drug-resistant disease. Whole-genome sequencing (WGS) studies of Mycobacterium …

Whole genome sequencing of clinical strains of Mycobacterium tuberculosis from Mumbai, India: a potential tool for determining drug-resistance and strain lineage

A Chatterjee, K Nilgiriwala, D Saranath, C Rodrigues… - Tuberculosis, 2017 - Elsevier
Amplification of drug resistance in Mycobacterium tuberculosis (M. tb) and its transmission
are significant barriers in controlling tuberculosis (TB) globally. Diagnostic inaccuracies and …

[HTML][HTML] Mycobacterium tuberculosis resistance prediction and lineage classification from genome sequencing: comparison of automated analysis tools

V Schleusener, CU Köser, P Beckert, S Niemann… - Scientific reports, 2017 - nature.com
Whole-genome sequencing (WGS) has the potential to accelerate drug-susceptibility testing
(DST) to design appropriate regimens for drug-resistant tuberculosis (TB). Several recently …