A basal transcription factor that activates or represses transcription

PJ Willy, R Kobayashi, JT Kadonaga - Science, 2000 - science.org
We have identified an activity that is required for transcription of downstream promoter
element (DPE)–containing core promoters in vitro. The purified factor was found to be the …

Transcription Regulation by the Noncoding RNA SRG1 Requires Spt2-Dependent Chromatin Deposition in the Wake of RNA Polymerase II

P Thebault, G Boutin, W Bhat, A Rufiange… - … and cellular biology, 2011 - Taylor & Francis
Spt2 is a chromatin component with roles in transcription and posttranscriptional regulation.
Recently, we found that Spt2 travels with RNA polymerase II (RNAP II), is involved in …

Regulation of mammalian ribosomal gene transcription by RNA polymerase I

I Grummt - Progress in nucleic acid research and molecular …, 1998 - Elsevier
All cells, from prokaryotes to vertebrates, synthesize vast amounts of ribosomal RNA to
produce the several million new ribosomes per generation that are required to maintain the …

[HTML][HTML] The Set2/Rpd3S pathway suppresses cryptic transcription without regard to gene length or transcription frequency

CR Lickwar, B Rao, AA Shabalin, AB Nobel, BD Strahl… - PloS one, 2009 - journals.plos.org
In cells lacking the histone methyltransferase Set2, initiation of RNA polymerase II
transcription occurs inappropriately within the protein-coding regions of genes, rather than …

RNA polymerase mutants that destabilize RNA polymerase-promoter complexes alter NTP-sensing by rrn P1 promoters

MS Bartlett, T Gaal, W Ross, RL Gourse - Journal of molecular biology, 1998 - Elsevier
Mutations in Escherichia coli rpoB or rpoC, selected for the ability to confer prototrophy on
relA spoT strains, were found to affect transcription from rrn P1 promoters. Two mutant …

Fine structure of the promoter–σ region 1.2 interaction

SP Haugen, W Ross, M Manrique… - Proceedings of the …, 2008 - National Acad Sciences
We recently proposed that a nontemplate strand base in the discriminator region of bacterial
promoters, the region between the− 10 element and the transcription start site, makes …

[HTML][HTML] Specific mutations near the amino terminus of double-stranded RNA-dependent protein kinase (PKR) differentially affect its double-stranded RNA binding and …

RC Patel, P Stanton, GC Sen - Journal of Biological Chemistry, 1996 - ASBMB
The amino-terminal region of the double-stranded (ds) RNA-dependent protein kinase, PKR,
has been shown to mediate both dsRNA binding and protein dimerization. To critically …

[HTML][HTML] The Role of the Alarmone (p) ppGpp in ςN Competition for Core RNA Polymerase

AD Laurie, LMD Bernardo, CC Sze… - Journal of Biological …, 2003 - ASBMB
Some promoters, including the DmpR-controlled ς N-dependent Po promoter, are effectively
rendered silent in cells lacking the nutritional alarmone (p) ppGpp. Here we demonstrate …

[HTML][HTML] The magic spot: a ppGpp binding site on E. coli RNA polymerase responsible for regulation of transcription initiation

W Ross, CE Vrentas, P Sanchez-Vazquez, T Gaal… - Molecular cell, 2013 - cell.com
The global regulatory nucleotide ppGpp (" magic spot") regulates transcription from a large
subset of Escherichia coli promoters, illustrating how small molecules can control gene …

Mechanism of PKR Activation by dsRNA

PA Lemaire, E Anderson, J Lary, JL Cole - Journal of molecular biology, 2008 - Elsevier
Protein kinase R (PKR) is a central component of the interferon antiviral defense pathway.
Upon binding double-stranded RNA (dsRNA), PKR undergoes autophosphorylation …