[HTML][HTML] The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m …

R Silva-Rocha, H de Jong, J Tamames… - BMC Systems Biology, 2011 - Springer
Background The genetic network of the TOL plasmid pWW0 of the soil bacterium
Pseudomonas putida mt-2 for catabolism of m-xylene is an archetypal model for …

The regulatory logic of m‐xylene biodegradation by Pseudomonas putida mt‐2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid

M Koutinas, MC Lam, A Kiparissides… - Environmental …, 2010 - Wiley Online Library
The structure of the extant transcriptional control network of the TOL plasmid pWW0 born by
Pseudomonas putida mt‐2 for biodegradation of m‐xylene is far more complex than one …

The TOL network of Pseudomonas putida mt‐2 processes multiple environmental inputs into a narrow response space

R Silva‐Rocha, V de Lorenzo - Environmental microbiology, 2013 - Wiley Online Library
The TOL system encoded by plasmid pWW0 of P seudomonas putida mt‐2 is able to sense
a large number of both exogenous and endogenous signals as inputs for the genetic and …

Inferring the genetic network of m‐xylene metabolism through expression profiling of the xyl genes of Pseudomonas putida mt‐2

F Velázquez, V Parro, V de Lorenzo - Molecular microbiology, 2005 - Wiley Online Library
A subgenomic array of structural and regulatory genes of the TOL plasmid pWW0 of
Pseudomonas putida mt‐2 has been constructed to sort out the interplay between m‐xylene …

Decoding the genetic networks of environmental bacteria: regulatory moonlighting of the TOL system of Pseudomonas putida mt-2

R Silva-Rocha, D Pérez-Pantoja… - The ISME journal, 2013 - academic.oup.com
The first mechanistic description of gene expression control was proposed by Jacob and
Monod (1961) for the lac operon of E. coli. The first version of the model contemplated …

High‐resolution analysis of the m‐xylene/toluene biodegradation subtranscriptome of Pseudomonas putida mt‐2

J Kim, D Pérez‐Pantoja, R Silva‐Rocha… - Environmental …, 2016 - Wiley Online Library
P seudomonas putida mt‐2 metabolizes m‐xylene and other aromatic compounds through
the enzymes encoded by the xyl operons of the TOL plasmid p WW0 along with other …

Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime in Pseudomonas putida mt‐2 exposed to m‐xylene

R Silva‐Rocha, V de Lorenzo - Molecular microbiology, 2012 - Wiley Online Library
The expression dynamics of the catabolic promoters of the TOL plasmid pWW0 has been
examined in single cells of Pseudomonas putida mt‐2 exposed to m‐xylene. To this end, we …

[HTML][HTML] Increasing Signal Specificity of the TOL Network of Pseudomonas putida mt-2 by Rewiring the Connectivity of the Master Regulator XylR

A de Las Heras, S Fraile, V de Lorenzo - 2012 - journals.plos.org
Prokaryotic transcription factors (TFs) that bind small xenobiotic molecules (eg, TFs that
drive genes that respond to environmental pollutants) often display a promiscuous effector …

Evolutionary conservation of genes coding for meta pathway enzymes within TOL plasmids pWW0 and pWW53

H Keil, S Keil, RW Pickup, PA Williams - Journal of bacteriology, 1985 - Am Soc Microbiol
Pseudomonas putida MT53 contains a TOL plasmid, pWW53, that encodes toluene-xylene
catabolism. pWW53 is nonconjugative, is about 105 to 110 kilobase pairs (kbp) in size, and …

Transcriptional kinetics of the cross-talk between the ortho-cleavage and TOL pathways of toluene biodegradation in Pseudomonas putida mt-2

A Tsipa, M Koutinas, EN Pistikopoulos… - Journal of …, 2016 - Elsevier
The TOL plasmid promoters are activated by toluene leading to gene expression
responsible for the degradation of the environmental signal. Benzoate is formed as an …