Machine learning methods and predictive ability metrics for genome-wide prediction of complex traits
Genome-wide prediction of complex traits has become increasingly important in animal and
plant breeding, and is receiving increasing attention in human genetics. Most common …
plant breeding, and is receiving increasing attention in human genetics. Most common …
[HTML][HTML] Accuracy of genome-enabled prediction in a dairy cattle population using different cross-validation layouts
MA Pérez-Cabal, AI Vazquez, D Gianola… - Frontiers in …, 2012 - frontiersin.org
The impact of extent of genetic relatedness on accuracy of genome-enabled predictions was
assessed using a dairy cattle population and alternative cross-validation (CV) strategies …
assessed using a dairy cattle population and alternative cross-validation (CV) strategies …
[HTML][HTML] Deep learning versus parametric and ensemble methods for genomic prediction of complex phenotypes
R Abdollahi-Arpanahi, D Gianola… - Genetics Selection …, 2020 - Springer
Background Transforming large amounts of genomic data into valuable knowledge for
predicting complex traits has been an important challenge for animal and plant breeders …
predicting complex traits has been an important challenge for animal and plant breeders …
[HTML][HTML] Kernel-based whole-genome prediction of complex traits: a review
Prediction of genetic values has been a focus of applied quantitative genetics since the
beginning of the 20th century, with renewed interest following the advent of the era of whole …
beginning of the 20th century, with renewed interest following the advent of the era of whole …
Whole-genome regression and prediction methods applied to plant and animal breeding
G de Los Campos, JM Hickey, R Pong-Wong… - Genetics, 2013 - academic.oup.com
Genomic-enabled prediction is becoming increasingly important in animal and plant
breeding and is also receiving attention in human genetics. Deriving accurate predictions of …
breeding and is also receiving attention in human genetics. Deriving accurate predictions of …
[HTML][HTML] Genome-wide prediction of discrete traits using Bayesian regressions and machine learning
O González-Recio, S Forni - Genetics Selection Evolution, 2011 - Springer
Background Genomic selection has gained much attention and the main goal is to increase
the predictive accuracy and the genetic gain in livestock using dense marker information …
the predictive accuracy and the genetic gain in livestock using dense marker information …
[HTML][HTML] Application of neural networks with back-propagation to genome-enabled prediction of complex traits in Holstein-Friesian and German Fleckvieh cattle
A Ehret, D Hochstuhl, D Gianola, G Thaller - Genetics Selection Evolution, 2015 - Springer
Background Recently, artificial neural networks (ANN) have been proposed as promising
machines for marker-based genomic predictions of complex traits in animal and plant …
machines for marker-based genomic predictions of complex traits in animal and plant …
Benchmarking parametric and machine learning models for genomic prediction of complex traits
The usefulness of genomic prediction in crop and livestock breeding programs has
prompted efforts to develop new and improved genomic prediction algorithms, such as …
prompted efforts to develop new and improved genomic prediction algorithms, such as …
[HTML][HTML] Within-and across-breed genomic prediction using whole-genome sequence and single nucleotide polymorphism panels
OOM Iheshiulor, JA Woolliams, X Yu… - Genetics Selection …, 2016 - Springer
Background Currently, genomic prediction in cattle is largely based on panels of about 54k
single nucleotide polymorphisms (SNPs). However with the decreasing costs of and current …
single nucleotide polymorphisms (SNPs). However with the decreasing costs of and current …
[HTML][HTML] A stacking ensemble learning framework for genomic prediction
M Liang, T Chang, B An, X Duan, L Du, X Wang… - Frontiers in …, 2021 - frontiersin.org
Machine learning (ML) is perhaps the most useful tool for the interpretation of large genomic
datasets. However, the performance of a single machine learning method in genomic …
datasets. However, the performance of a single machine learning method in genomic …