[HTML][HTML] SARS-CoV-2 variant evolution in the United States: High accumulation of viral mutations over time likely through serial Founder Events and mutational bursts

RN Tasakis, G Samaras, A Jamison, M Lee, A Paulus… - PLoS …, 2021 - journals.plos.org
Since the first case of COVID-19 in December 2019 in Wuhan, China, SARS-CoV-2 has
spread worldwide and within a year and a half has caused 3.56 million deaths globally. With …

Emergence and evolution of a prevalent new SARS-CoV-2 variant in the United States

AA Pater, MS Bosmeny, CL Barkau, KN Ovington… - BioRxiv, 2021 - biorxiv.org
Genomic virus surveillance can lead to early identification of new variants and inform proper
response during a pandemic. Using this approach, we have identified a new variant of the …

Mutation landscape of SARS-CoV-2 reveals five mutually exclusive clusters of leading and trailing single nucleotide substitutions

A Mishra, AK Pandey, P Gupta, P Pradhan, S Dhamija… - bioRxiv, 2020 - biorxiv.org
The COVID-19 pandemic has spread across the globe at an alarming rate. However, unlike
any of the previous global outbreaks the availability of a large number of SARS-CoV-2 …

[HTML][HTML] SARS-CoV-2 lineage B. 1.526 emerging in the New York region detected by software utility created to query the spike mutational landscape

AP West, CO Barnes, Z Yang, PJ Bjorkman - BioRxiv, 2021 - biorxiv.org
Abstract Wide-scale SARS-CoV-2 genome sequencing is critical to monitoring and
understanding viral evolution during the ongoing pandemic. Variants first detected in the …

[HTML][HTML] Detection and characterization of the SARS-CoV-2 lineage B. 1.526 in New York

AP West Jr, JO Wertheim, JC Wang… - Nature …, 2021 - nature.com
Abstract Wide-scale SARS-CoV-2 genome sequencing is critical to tracking viral evolution
during the ongoing pandemic. We develop the software tool, Variant Database (VDB), for …

Sequence analysis of 20,453 SARS-CoV-2 genomes from the Houston Metropolitan Area identifies the emergence and widespread distribution of multiple isolates of …

SW Long, RJ Olsen, PA Christensen, S Subedi… - MedRxiv, 2021 - medrxiv.org
Since the beginning of the SARS-CoV-2 pandemic, there has been international concern
about the emergence of virus variants with mutations that increase transmissibility, enhance …

Emergence of genomic diversity and recurrent mutations in SARS-CoV-2

L Van Dorp, M Acman, D Richard, LP Shaw… - Infection, Genetics and …, 2020 - Elsevier
SARS-CoV-2 is a SARS-like coronavirus of likely zoonotic origin first identified in December
2019 in Wuhan, the capital of China's Hubei province. The virus has since spread globally …

Time series analysis of SARS-CoV-2 genomes and correlations among highly prevalent mutations

N Periwal, SB Rathod, S Sarma, GS Johar… - Microbiology …, 2022 - Am Soc Microbiol
The efforts of the scientific community to tame the recent pandemic caused by severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2) seem to have been diluted by the …

[HTML][HTML] Genomic diversity and hotspot mutations in 30,983 SARS-CoV-2 genomes: moving toward a universal vaccine for the “confined virus”?

T Alouane, M Laamarti, A Essabbar, M Hakmi… - Pathogens, 2020 - mdpi.com
The COVID-19 pandemic has been ongoing since its onset in late November 2019 in
Wuhan, China. Understanding and monitoring the genetic evolution of the virus, its …

[HTML][HTML] Global landscape of SARS-CoV-2 mutations and conserved regions

MH Abbasian, M Mahmanzar, K Rahimian… - Journal of Translational …, 2023 - Springer
Background At the end of December 2019, a novel strain of Severe Acute Respiratory
Syndrome Coronavirus 2 (SARS-CoV-2) disease (COVID-19) has been identified in Wuhan …